diff macros.xml @ 1:724dcbb35c9a draft default tip

planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe

--- a/macros.xml	Mon Jan 13 16:27:12 2025 +0000
+++ b/macros.xml	Sat Aug 16 11:43:23 2025 +0000
@@ -1,12 +1,11 @@
 <macros>
-
 <xml name="requirements">
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">saqc</requirement>
     </requirements>
 </xml>
 
-<token name="@TOOL_VERSION@">2.4.1</token>
+<token name="@TOOL_VERSION@">2.6.0</token>
 <token name="@VERSION_SUFFIX@">0</token>
 
 <xml name="citations">
@@ -15,4 +14,115 @@
     </citations>
 </xml>
 
+<xml name="field">
+    <param argument="field"
+           label="Field"
+           optional="false"
+           value=""
+           type="text"
+           help="Variable to process"/>
+</xml>
+
+<xml name="field_multiple">
+    <repeat name="field_repeat" title="field(s)" min="1">
+        <param argument="field"
+               label="Field"
+               optional="false"
+               value=""
+               type="text"
+               help="Variable to process"/>
+    </repeat>
+</xml>
+
+<xml name="flag">
+    <param argument="flag"
+           label="Flag"
+           optional="true"
+           value="255.0"
+           type="float"
+           help="The flag value the function uses to mark observations"/>
+</xml>
+
+<xml name="saqc_tests">
+    <tests>
+    <expand macro="config_tests"/>
+    <test>
+        <param name="data" value="test1/data.csv" ftype="csv"/>
+        <repeat name="methods_repeat">
+            <conditional name="module_cond">
+                <param name="module_select" value="outliers"/>
+                <conditional name="method_cond">
+                    <param name="method_select" value="flagRange"/>
+                    <param name="field" value="SM2"/>
+                    <param name="max" value="60.0"/>
+                    <param name="min" value="10.0"/>
+                    
+                    <param name="flag" value="255.0"/>
+                </conditional>
+            </conditional>
+        </repeat>
+        <repeat name="methods_repeat">
+            <conditional name="module_cond">
+                <param name="module_select" value="outliers"/>
+                <conditional name="method_cond">
+                
+                    <param name="method_select" value="flagZScore"/>
+
+                    <repeat name="field_repeat">
+                    <param name="field" value="SM2"/>
+                    </repeat>
+                    <param name="center" value="false"/>
+                    <conditional name="window_cond">
+                        <param name="window_select_type" value="timedelta"/>
+                        <param name="window" value="30d"/>
+                    </conditional>
+                    <param name="thresh" value="3.5"/>
+                    <param name="method" value="modified"/>
+                    
+                    <param name="flag" value="255.0"/>
+                </conditional>
+            </conditional> 
+        </repeat>
+        <repeat name="methods_repeat">
+            <conditional name="module_cond">
+                <param name="module_select" value="tools"/>
+                <conditional name="method_cond">
+                    <param name="method_select" value="plot"/>
+                    <param name="field" value="SM2"/>
+                    <param name="path" value="test"/>
+                    <conditional name="history_cond">
+                        <param name="history_select_type" value="valid" />
+                        <param name="history" value="valid" />
+                    </conditional>
+                    <param name="mode" value="oneplot"/>
+                    <param name="max_gap" value="" />
+                    <param name="xscope" value="" />
+                    <param name="yscope" value="" />
+                    <param name="dfilter" value="inf" />
+                </conditional>
+            </conditional>
+        </repeat>
+
+        <output name="output" value="test1/out.csv" ftype="csv"/>
+        <output name="config_out" ftype="txt">
+            <assert_contents>
+                <has_n_lines n="4"/>
+                <has_n_columns n="2" sep=";"/>
+                <has_text_matching expression="flagRange.*max=60.0.*min=10.0"/>
+                <has_text_matching expression='flagZScore.*method="modified".*thresh=3.5.*window="30d"'/>
+                <has_text_matching expression='plot.*dfilter=float\(&apos;inf&apos;\).*history="valid".*path="test"'/>
+            </assert_contents>
+        </output>
+            
+        <output_collection name="plots" type="list">
+            <element name="test" ftype="png">
+                <assert_contents>
+                    <has_text text="PNG"/>
+                    <has_size value="120k" delta="10k"/>
+                </assert_contents>
+            </element>
+        </output_collection>
+    </test>
+    </tests>
+</xml>
 </macros>
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