Mercurial > repos > ufz > virsorter_build_database
changeset 2:c456ae8354f2 draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit 40d304560b0b732bcc2b6397a72964caf1a5a451
| author | ufz |
|---|---|
| date | Wed, 18 Dec 2024 12:30:47 +0000 |
| parents | ad63dbb3493a |
| children | |
| files | data_manager/virsorter_datamanager.xml data_manager_conf.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/virsorter_datamanager.xml Mon Nov 18 15:26:28 2024 +0000 +++ b/data_manager/virsorter_datamanager.xml Wed Dec 18 12:30:47 2024 +0000 @@ -3,7 +3,7 @@ <description>database builder</description> <macros> <token name="@TOOL_VERSION@">2.2.4</token> <!-- when updating make sure to double check the db version --> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">22.01</token> <!-- zenodo ID and the version of the reference data is hardcoded in the current version virsorter: https://github.com/jiarong/VirSorter2/blob/c0dcac53f3373244bf1bd552a7c2104d53802df7/virsorter/rules/setup.smk#L13
--- a/data_manager_conf.xml Mon Nov 18 15:26:28 2024 +0000 +++ b/data_manager_conf.xml Wed Dec 18 12:30:47 2024 +0000 @@ -8,9 +8,9 @@ <column name="path" output_ref="out_file"> <move type="directory"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">virsorter/${path}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">virsorter/${value}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/virsorter/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/virsorter/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>