Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
comparison WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/edit_tool_conf.py~ @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
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date | Tue, 05 Jul 2011 19:34:18 -0400 |
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-1:000000000000 | 0:049760c677de |
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1 ''' | |
2 @author Chaitanya Guttula, Sumedha Ganjoo | |
3 @see LICENSE (MIT style license file). | |
4 ''' | |
5 | |
6 import os | |
7 | |
8 ''' | |
9 Open the toolconf.xml file and adds the tool under 'Web Service Workflow Tools' that has been passed to it. | |
10 | |
11 ''' | |
12 | |
13 __author__="Chaitanya Guttula, Sumedha Ganjoo" | |
14 | |
15 class editToolConfig(object): | |
16 def addTool(self,toolName): | |
17 galaxyhome=os.environ.get('GALAXY_HOME') | |
18 f1=open(galaxyhome+'/tool_conf.xml','r') | |
19 f1.seek(0,0) | |
20 f2=open(galaxyhome+'/tool_conf_backup.xml','w') | |
21 f2.seek(0,0) | |
22 | |
23 ##first copy everything upto WebServiceTool1.xml into another file f2 | |
24 line = f1.readline() | |
25 f2.write(line) | |
26 | |
27 lineStripped=line.lstrip() | |
28 lineStripped=lineStripped.rstrip() | |
29 | |
30 #add the workflow Web service invocation tool under Web Service Workflow Tools section | |
31 while not lineStripped == '<section name="Web Service Workflow Tools" id="WebServiceWorkflow">': | |
32 line = f1.readline() | |
33 f2.write(line) | |
34 lineStripped = line.lstrip() | |
35 lineStripped=lineStripped.rstrip() | |
36 else: | |
37 print line | |
38 | |
39 ## add new tool to f2 | |
40 f2.write(' <tool file="WebServiceToolWorkflow_REST_SOAP/workflowclients/'+toolName + '.xml"/>\n') | |
41 | |
42 ## copy rest of f1 into f2 | |
43 while not lineStripped == '</toolbox>': | |
44 line = f1.readline() | |
45 f2.write(line) | |
46 lineStripped = line.lstrip() | |
47 lineStripped=lineStripped.rstrip() | |
48 else: | |
49 print line | |
50 | |
51 ##close f1 and f2 | |
52 f1.close() | |
53 f2.close() | |
54 | |
55 ##interchange modes of f1 and f2 | |
56 f1=open(galaxyhome+'/tool_conf.xml','w') | |
57 f1.seek(0,0) | |
58 f2=open(galaxyhome+'/tool_conf_backup.xml','r') | |
59 f2.seek(0,0) | |
60 | |
61 line = f2.readline() | |
62 f1.write(line) | |
63 | |
64 lineStripped=line.lstrip() | |
65 | |
66 ##write entire f2 into f1 (reverse roles) | |
67 while not lineStripped == '</toolbox>': | |
68 line = f2.readline() | |
69 f1.write(line) | |
70 lineStripped = line.lstrip() | |
71 lineStripped=lineStripped.rstrip() | |
72 else: | |
73 print line | |
74 | |
75 f1.close() | |
76 f2.close() |