Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
comparison WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/edit_tool_conf1.py~ @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
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date | Tue, 05 Jul 2011 19:34:18 -0400 |
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-1:000000000000 | 0:049760c677de |
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1 ''' | |
2 @author Chaitanya Guttula, Sumedha Ganjoo | |
3 @see LICENSE (MIT style license file). | |
4 ''' | |
5 | |
6 import os | |
7 | |
8 ''' | |
9 Opens the toolconf.xml file and then adds the tool that is paased to it under Web Service tools | |
10 ''' | |
11 | |
12 __author__="" | |
13 | |
14 class editToolConfig1(object): | |
15 def addTool(self,toolName): | |
16 galaxyhome=os.environ.get('GALAXY_HOME') | |
17 f1=open(galaxyhome+'/tool_conf.xml','r') | |
18 f1.seek(0,0) | |
19 f2=open(galaxyhome+'/tool_conf_backup.xml','w') | |
20 f2.seek(0,0) | |
21 | |
22 #copy everything from tool_conf.xml upto the section 'Web Service Tools' into another file f2 | |
23 line = f1.readline() | |
24 f2.write(line) | |
25 | |
26 lineStripped=line.lstrip() | |
27 lineStripped=lineStripped.rstrip() | |
28 | |
29 #add the one-time Web service invocation tool under Web Service Tools section | |
30 while not lineStripped == '<section name="Web Service Tools" id="WebServices">': | |
31 line = f1.readline() | |
32 f2.write(line) | |
33 lineStripped = line.lstrip() | |
34 lineStripped=lineStripped.rstrip() | |
35 else: | |
36 print line | |
37 | |
38 f2.write(' <tool file="WebServiceToolWorkflow_REST_SOAP/clients/'+toolName + '.xml"/>\n') | |
39 | |
40 #copy rest of tool_conf.xml file f2 | |
41 while not lineStripped == '</toolbox>': | |
42 line = f1.readline() | |
43 f2.write(line) | |
44 lineStripped = line.lstrip() | |
45 lineStripped=lineStripped.rstrip() | |
46 else: | |
47 print line | |
48 | |
49 ##close f1 and f2 | |
50 f1.close() | |
51 f2.close() | |
52 | |
53 ##interchange modes of f1 and f2 | |
54 f1=open(galaxyhome+'/tool_conf.xml','w') | |
55 f1.seek(0,0) | |
56 f2=open(galaxyhome+'/tool_conf_backup.xml','r') | |
57 f2.seek(0,0) | |
58 | |
59 line = f2.readline() | |
60 f1.write(line) | |
61 | |
62 lineStripped=line.lstrip() | |
63 lineStripped = lineStripped.rstrip() | |
64 | |
65 ##write entire f2 into f1 (reverse roles) | |
66 while not lineStripped == '</toolbox>': | |
67 line = f2.readline() | |
68 f1.write(line) | |
69 lineStripped = line.lstrip() | |
70 lineStripped = lineStripped.rstrip() | |
71 else: | |
72 print line | |
73 | |
74 f1.close() | |
75 f2.close() |