Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
diff WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/workflowclients/client_86.xml~ @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
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date | Tue, 05 Jul 2011 19:34:18 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/workflowclients/client_86.xml~ Tue Jul 05 19:34:18 2011 -0400 @@ -0,0 +1,431 @@ +<tool id="client_86" name="wublast.run"> + <description> Client for operation : run , Web service : wublast.wublast_services </description> + <command interpreter="python"> + client_1.py + #if $cond_source.optional_param_source=="no": + $output + $servicetype + $url + $method +wublast.wublast_services run + "_parameters|_sequence" + #if $source0.source0_source=="user": + $source0.user_param0 + #else: + fileInput + $source0.cached_param0 + #end if + "_parameters|_stype" + #if $source1.source1_source=="user": + $source1.user_param1 + #else: + fileInput + $source1.cached_param1 + #end if + "_parameters|_program" + #if $source2.source2_source=="user": + $source2.user_param2 + #else: + fileInput + $source2.cached_param2 + #end if + "_email" + #if $source3.source3_source=="user": + $source3.user_param3 + #else: + fileInput + $source3.cached_param3 + #end if + "_parameters|_database|_string|$|" + #if $source4.source4_source=="user": + $source4.user_param4 + #else: + fileInput + $source4.cached_param4 + #end if + #else: + $output + $servicetype + $url + $method +wublast.wublast_services run + "_parameters|_sequence" + #if $source0.source0_source=="user": + $source0.user_param0 + #else: + fileInput + $source0.cached_param0 + #end if + "_parameters|_stype" + #if $source1.source1_source=="user": + $source1.user_param1 + #else: + fileInput + $source1.cached_param1 + #end if + "_parameters|_program" + #if $source2.source2_source=="user": + $source2.user_param2 + #else: + fileInput + $source2.cached_param2 + #end if + "_email" + #if $source3.source3_source=="user": + $source3.user_param3 + #else: + fileInput + $source3.cached_param3 + #end if + "_parameters|_database|_string|$|" + #if $source4.source4_source=="user": + $source4.user_param4 + #else: + fileInput + $source4.cached_param4 + #end if + "_parameters|_sensitivity" + #if $cond_source.source5.source5_source=="user": + $cond_source.source5.user_param5 + #else: + fileInput + $cond_source.source5.cached_param5 + #end if + "_parameters|_topcombon" + #if $cond_source.source6.source6_source=="user": + $cond_source.source6.user_param6 + #else: + fileInput + $cond_source.source6.cached_param6 + #end if + "_parameters|_filter" + #if $cond_source.source7.source7_source=="user": + $cond_source.source7.user_param7 + #else: + fileInput + $cond_source.source7.cached_param7 + #end if + "_parameters|_alignments" + #if $cond_source.source8.source8_source=="user": + $cond_source.source8.user_param8 + #else: + fileInput + $cond_source.source8.cached_param8 + #end if + "_parameters|_scores" + #if $cond_source.source9.source9_source=="user": + $cond_source.source9.user_param9 + #else: + fileInput + $cond_source.source9.cached_param9 + #end if + "_parameters|_viewfilter" + #if $cond_source.source10.source10_source=="user": + $cond_source.source10.user_param10 + #else: + fileInput + $cond_source.source10.cached_param10 + #end if + "_parameters|_sort" + #if $cond_source.source11.source11_source=="user": + $cond_source.source11.user_param11 + #else: + fileInput + $cond_source.source11.cached_param11 + #end if + "_parameters|_strand" + #if $cond_source.source12.source12_source=="user": + $cond_source.source12.user_param12 + #else: + fileInput + $cond_source.source12.cached_param12 + #end if + "_parameters|_align" + #if $cond_source.source13.source13_source=="user": + $cond_source.source13.user_param13 + #else: + fileInput + $cond_source.source13.cached_param13 + #end if + "_parameters|_matrix" + #if $cond_source.source14.source14_source=="user": + $cond_source.source14.user_param14 + #else: + fileInput + $cond_source.source14.cached_param14 + #end if + "_title" + #if $cond_source.source15.source15_source=="user": + $cond_source.source15.user_param15 + #else: + fileInput + $cond_source.source15.cached_param15 + #end if + "_parameters|_stats" + #if $cond_source.source16.source16_source=="user": + $cond_source.source16.user_param16 + #else: + fileInput + $cond_source.source16.cached_param16 + #end if + "_parameters|_exp" + #if $cond_source.source17.source17_source=="user": + $cond_source.source17.user_param17 + #else: + fileInput + $cond_source.source17.cached_param17 + #end if + #end if +</command> + <inputs> + <param name="servicetype" type="hidden" value="SOAP" /> + <param name="url" type="hidden" value="http://www.cs.uga.edu/~guttula/wublast.wsdl" /> + <param name="method" type="hidden" value="run" /> +<conditional name="source0"> + <param name="source0_source" type="select" label="sequence Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> + </param> + <when value="user"> + <param format="text" size = "150" name = "user_param0" type="text" label="Enter sequence" help="see tip below" /> + </when> + <when value="cached"> + <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter sequence"/> + </when> + </conditional><conditional name="source1"> + <param name="source1_source" type="select" label="stype Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> + </param> + <when value="user"> + <param format="text" size = "150" name = "user_param1" type="text" label="Enter stype" help="see tip below" /> + </when> + <when value="cached"> + <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter stype"/> + </when> + </conditional><conditional name="source2"> + <param name="source2_source" type="select" label="program Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> + </param> + <when value="user"> + <param format="text" size = "150" name = "user_param2" type="text" label="Enter program" help="see tip below" /> + </when> + <when value="cached"> + <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter program"/> + </when> + </conditional><conditional name="source3"> + <param name="source3_source" type="select" label="email Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> + </param> + <when value="user"> + <param format="text" size = "150" name = "user_param3" type="text" label="Enter email" help="see tip below" /> + </when> + <when value="cached"> + <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter email"/> + </when> + </conditional><conditional name="source4"> + <param name="source4_source" type="select" label="database Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> + </param> + <when value="user"> + <param format="text" size = "150" name = "user_param4" type="text" label="Enter database" help="see tip below" /> + </when> + <when value="cached"> + <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter database"/> + </when> + </conditional> <conditional name="cond_source"> + <param name="optional_param_source" type="select" label="Display Optional Parameters"> + <option value="no" selected="true">no</option> + <option value="yes">yes</option> + </param> + <when value="no"> + </when> + <when value="yes"> + +<conditional name="source5"> + <param name="source5_source" type="select" label="sensitivity Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param5" type="text" label="Enter sensitivity" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter sensitivity"/> + </when> + </conditional> + +<conditional name="source6"> + <param name="source6_source" type="select" label="topcombon Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param6" type="text" label="Enter topcombon" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter topcombon"/> + </when> + </conditional> + +<conditional name="source7"> + <param name="source7_source" type="select" label="filter Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param7" type="text" label="Enter filter" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter filter"/> + </when> + </conditional> + +<conditional name="source8"> + <param name="source8_source" type="select" label="alignments Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param8" type="text" label="Enter alignments" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter alignments"/> + </when> + </conditional> + +<conditional name="source9"> + <param name="source9_source" type="select" label="scores Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param9" type="text" label="Enter scores" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter scores"/> + </when> + </conditional> + +<conditional name="source10"> + <param name="source10_source" type="select" label="viewfilter Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param10" type="text" label="Enter viewfilter" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter viewfilter"/> + </when> + </conditional> + +<conditional name="source11"> + <param name="source11_source" type="select" label="sort Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param11" type="text" label="Enter sort" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter sort"/> + </when> + </conditional> + +<conditional name="source12"> + <param name="source12_source" type="select" label="strand Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param12" type="text" label="Enter strand" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter strand"/> + </when> + </conditional> + +<conditional name="source13"> + <param name="source13_source" type="select" label="align Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param13" type="text" label="Enter align" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter align"/> + </when> + </conditional> + +<conditional name="source14"> + <param name="source14_source" type="select" label="matrix Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param14" type="text" label="Enter matrix" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter matrix"/> + </when> + </conditional> + +<conditional name="source15"> + <param name="source15_source" type="select" label="title Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param15" type="text" label="Enter title" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter title"/> + </when> + </conditional> + +<conditional name="source16"> + <param name="source16_source" type="select" label="stats Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param16" type="text" label="Enter stats" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter stats"/> + </when> + </conditional> + +<conditional name="source17"> + <param name="source17_source" type="select" label="exp Source"> + <option value="cached" selected="true">Param value will be taken from previous step</option> + <option value="user">User will enter the param value</option> +</param> + <when value="user"><param format="text" size = "150" name = "user_param17" type="text" label="Enter exp" help="see tip below" /> + </when> +<when value="cached"> + <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter exp"/> + </when> + </conditional> + </when> + </conditional> +</inputs> + <outputs> + <data format="tabular" name="output" /> + </outputs> + <help> + +.. class:: infomark + +**TIP:** About sequence: type is String + +.. class:: infomark + +**TIP:** About stype: type is String + +.. class:: infomark + +**TIP:** About program: type is String + +.. class:: infomark + +**TIP:** About email: type is String + +.. class:: infomark + +**TIP:** About database: type is String + </help> +</tool> \ No newline at end of file