diff WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/edit_tool_conf1.py @ 0:049760c677de default tip

Galaxy WSExtensions added successfully

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/edit_tool_conf1.py	Tue Jul 05 19:34:18 2011 -0400
@@ -0,0 +1,75 @@
+'''
+@author  Chaitanya Guttula, Sumedha Ganjoo
+@see     LICENSE (MIT style license file).
+'''
+
+import os
+
+'''
+Opens the toolconf.xml file and then adds the tool that is paased to it under Web Service tools
+'''
+
+__author__=""
+
+class editToolConfig1(object):
+    def addTool(self,toolName):
+      galaxyhome=os.environ.get('GALAXY_HOME')
+      f1=open(galaxyhome+'/tool_conf.xml','r')
+      f1.seek(0,0)
+      f2=open(galaxyhome+'/tool_conf_backup.xml','w')
+      f2.seek(0,0)
+
+      #copy everything from tool_conf.xml upto the section 'Web Service Tools' into another file f2
+      line = f1.readline()
+      f2.write(line)
+
+      lineStripped=line.lstrip()
+      lineStripped=lineStripped.rstrip()
+
+      #add the one-time Web service invocation tool under Web Service Tools section
+      while not lineStripped == '<section name="Select Web Service Tool" id="WebServices">':
+        line = f1.readline()
+        f2.write(line)
+        lineStripped = line.lstrip()
+        lineStripped=lineStripped.rstrip()        
+      else:
+        print line
+
+      f2.write('    <tool file="WebServiceToolWorkflow_REST_SOAP/clients/'+toolName + '.xml"/>\n')
+
+      #copy rest of tool_conf.xml file f2
+      while not lineStripped == '</toolbox>':
+        line = f1.readline()
+        f2.write(line)
+        lineStripped = line.lstrip()
+        lineStripped=lineStripped.rstrip()          
+      else:
+        print line
+
+      ##close f1 and f2
+      f1.close()
+      f2.close()
+
+      ##interchange modes of f1 and f2
+      f1=open(galaxyhome+'/tool_conf.xml','w')
+      f1.seek(0,0)
+      f2=open(galaxyhome+'/tool_conf_backup.xml','r')
+      f2.seek(0,0)
+
+      line = f2.readline()
+      f1.write(line)
+
+      lineStripped=line.lstrip()
+      lineStripped = lineStripped.rstrip()
+
+      ##write entire f2 into f1 (reverse roles)
+      while not lineStripped == '</toolbox>':
+        line = f2.readline()
+        f1.write(line)
+        lineStripped = line.lstrip()
+        lineStripped = lineStripped.rstrip()        
+      else:
+        print line
+
+      f1.close()
+      f2.close()