Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
view WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/edit_tool_conf.py @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
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date | Tue, 05 Jul 2011 19:34:18 -0400 |
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''' @author Chaitanya Guttula, Sumedha Ganjoo @see LICENSE (MIT style license file). ''' import os ''' Open the toolconf.xml file and adds the tool under 'Web Service Workflow Tools' that has been passed to it. ''' class editToolConfig(object): def addTool(self,toolName): galaxyhome=os.environ.get('GALAXY_HOME') f1=open(galaxyhome+'/tool_conf.xml','r') f1.seek(0,0) f2=open(galaxyhome+'/tool_conf_backup.xml','w') f2.seek(0,0) ##first copy everything upto WebServiceTool1.xml into another file f2 line = f1.readline() f2.write(line) lineStripped=line.lstrip() lineStripped=lineStripped.rstrip() #add the workflow Web service invocation tool under Web Service Workflow Tools section while not lineStripped == '<section name="Select Web Service Workflow Tool" id="WebServiceWorkflow">': line = f1.readline() f2.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line ## add new tool to f2 f2.write(' <tool file="WebServiceToolWorkflow_REST_SOAP/workflowclients/'+toolName + '.xml"/>\n') ## copy rest of f1 into f2 while not lineStripped == '</toolbox>': line = f1.readline() f2.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line ##close f1 and f2 f1.close() f2.close() ##interchange modes of f1 and f2 f1=open(galaxyhome+'/tool_conf.xml','w') f1.seek(0,0) f2=open(galaxyhome+'/tool_conf_backup.xml','r') f2.seek(0,0) line = f2.readline() f1.write(line) lineStripped=line.lstrip() ##write entire f2 into f1 (reverse roles) while not lineStripped == '</toolbox>': line = f2.readline() f1.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line f1.close() f2.close()