view WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/workflowclients/client_8.xml~ @ 0:049760c677de default tip

Galaxy WSExtensions added successfully

<tool id="client_8" name="run">
  <description> Client for operation : run , Web service: wublast.wublast_services </description>
  <command interpreter="python">
  	client_1.py
	#if $cond_source.optional_param_source=="no":
  	$output
	$servicetype
      $url
      $method
wublast.wublast_services         run
	"_parameters|_sequence"
	 #if $source0.source0_source=="user":
	 $source0.user_param0
	 #else:
	 fileInput
	 $source0.cached_param0
	 #end if
	"_parameters|_stype"
	 #if $source1.source1_source=="user":
	 $source1.user_param1
	 #else:
	 fileInput
	 $source1.cached_param1
	 #end if
	"_parameters|_program"
	 #if $source2.source2_source=="user":
	 $source2.user_param2
	 #else:
	 fileInput
	 $source2.cached_param2
	 #end if
	"_email"
	 #if $source3.source3_source=="user":
	 $source3.user_param3
	 #else:
	 fileInput
	 $source3.cached_param3
	 #end if
	"_parameters|_database|_string|$|"
	 #if $source4.source4_source=="user":
	 $source4.user_param4
	 #else:
	 fileInput
	 $source4.cached_param4
	 #end if
   	#else:
  	$output
	$servicetype
      $url
      $method
wublast.wublast_services            run
	"_parameters|_sequence"
	 #if $source0.source0_source=="user":
	 $source0.user_param0
	 #else:
	 fileInput
	 $source0.cached_param0
	 #end if
	"_parameters|_stype"
	 #if $source1.source1_source=="user":
	 $source1.user_param1
	 #else:
	 fileInput
	 $source1.cached_param1
	 #end if
	"_parameters|_program"
	 #if $source2.source2_source=="user":
	 $source2.user_param2
	 #else:
	 fileInput
	 $source2.cached_param2
	 #end if
	"_email"
	 #if $source3.source3_source=="user":
	 $source3.user_param3
	 #else:
	 fileInput
	 $source3.cached_param3
	 #end if
	"_parameters|_database|_string|$|"
	 #if $source4.source4_source=="user":
	 $source4.user_param4
	 #else:
	 fileInput
	 $source4.cached_param4
	 #end if
	"_parameters|_sensitivity"
	 #if $cond_source.source5.source5_source=="user":
	 $cond_source.source5.user_param5
	 #else:
	 fileInput
	 $cond_source.source5.cached_param5
	 #end if
	"_parameters|_topcombon"
	 #if $cond_source.source6.source6_source=="user":
	 $cond_source.source6.user_param6
	 #else:
	 fileInput
	 $cond_source.source6.cached_param6
	 #end if
	"_parameters|_filter"
	 #if $cond_source.source7.source7_source=="user":
	 $cond_source.source7.user_param7
	 #else:
	 fileInput
	 $cond_source.source7.cached_param7
	 #end if
	"_parameters|_alignments"
	 #if $cond_source.source8.source8_source=="user":
	 $cond_source.source8.user_param8
	 #else:
	 fileInput
	 $cond_source.source8.cached_param8
	 #end if
	"_parameters|_scores"
	 #if $cond_source.source9.source9_source=="user":
	 $cond_source.source9.user_param9
	 #else:
	 fileInput
	 $cond_source.source9.cached_param9
	 #end if
	"_parameters|_viewfilter"
	 #if $cond_source.source10.source10_source=="user":
	 $cond_source.source10.user_param10
	 #else:
	 fileInput
	 $cond_source.source10.cached_param10
	 #end if
	"_parameters|_sort"
	 #if $cond_source.source11.source11_source=="user":
	 $cond_source.source11.user_param11
	 #else:
	 fileInput
	 $cond_source.source11.cached_param11
	 #end if
	"_parameters|_strand"
	 #if $cond_source.source12.source12_source=="user":
	 $cond_source.source12.user_param12
	 #else:
	 fileInput
	 $cond_source.source12.cached_param12
	 #end if
	"_parameters|_align"
	 #if $cond_source.source13.source13_source=="user":
	 $cond_source.source13.user_param13
	 #else:
	 fileInput
	 $cond_source.source13.cached_param13
	 #end if
	"_parameters|_matrix"
	 #if $cond_source.source14.source14_source=="user":
	 $cond_source.source14.user_param14
	 #else:
	 fileInput
	 $cond_source.source14.cached_param14
	 #end if
	"_title"
	 #if $cond_source.source15.source15_source=="user":
	 $cond_source.source15.user_param15
	 #else:
	 fileInput
	 $cond_source.source15.cached_param15
	 #end if
	"_parameters|_stats"
	 #if $cond_source.source16.source16_source=="user":
	 $cond_source.source16.user_param16
	 #else:
	 fileInput
	 $cond_source.source16.cached_param16
	 #end if
	"_parameters|_exp"
	 #if $cond_source.source17.source17_source=="user":
	 $cond_source.source17.user_param17
	 #else:
	 fileInput
	 $cond_source.source17.cached_param17
	 #end if
   	#end if
</command>
  <inputs>
     <param name="servicetype" type="hidden" value="SOAP" />
     <param name="url" type="hidden" value="http://www.cs.uga.edu/~guttula/wublast.wsdl" />
     <param name="method" type="hidden" value="run" />
<conditional name="source0">
    <param name="source0_source" type="select" label="sequence Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param0"  type="text" label="Enter sequence" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter sequence"/> 
 </when>
   </conditional><conditional name="source1">
    <param name="source1_source" type="select" label="stype Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param1"  type="text" label="Enter stype" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter stype"/> 
 </when>
   </conditional><conditional name="source2">
    <param name="source2_source" type="select" label="program Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param2"  type="text" label="Enter program" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter program"/> 
 </when>
   </conditional><conditional name="source3">
    <param name="source3_source" type="select" label="email Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param3"  type="text" label="Enter email" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter email"/> 
 </when>
   </conditional><conditional name="source4">
    <param name="source4_source" type="select" label="database Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param4"  type="text" label="Enter database" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter database"/> 
 </when>
   </conditional>  <conditional name="cond_source">
  <param name="optional_param_source" type="select" label="Display Additional Parameters"> 
 <option value="no" selected="true">no</option> 
 <option value="yes">yes</option> 
 </param> 
    <when value="no"> 
     </when>
    <when value="yes"> 

<conditional name="source5">
  <param name="source5_source" type="select" label="sensitivity Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param5"  type="text" label="Enter sensitivity" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter sensitivity"/> 
  </when>
   </conditional>

<conditional name="source6">
  <param name="source6_source" type="select" label="topcombon Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param6"  type="text" label="Enter topcombon" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter topcombon"/> 
  </when>
   </conditional>

<conditional name="source7">
  <param name="source7_source" type="select" label="filter Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param7"  type="text" label="Enter filter" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter filter"/> 
  </when>
   </conditional>

<conditional name="source8">
  <param name="source8_source" type="select" label="alignments Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param8"  type="text" label="Enter alignments" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter alignments"/> 
  </when>
   </conditional>

<conditional name="source9">
  <param name="source9_source" type="select" label="scores Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param9"  type="text" label="Enter scores" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter scores"/> 
  </when>
   </conditional>

<conditional name="source10">
  <param name="source10_source" type="select" label="viewfilter Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param10"  type="text" label="Enter viewfilter" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter viewfilter"/> 
  </when>
   </conditional>

<conditional name="source11">
  <param name="source11_source" type="select" label="sort Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param11"  type="text" label="Enter sort" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter sort"/> 
  </when>
   </conditional>

<conditional name="source12">
  <param name="source12_source" type="select" label="strand Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param12"  type="text" label="Enter strand" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter strand"/> 
  </when>
   </conditional>

<conditional name="source13">
  <param name="source13_source" type="select" label="align Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param13"  type="text" label="Enter align" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter align"/> 
  </when>
   </conditional>

<conditional name="source14">
  <param name="source14_source" type="select" label="matrix Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param14"  type="text" label="Enter matrix" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter matrix"/> 
  </when>
   </conditional>

<conditional name="source15">
  <param name="source15_source" type="select" label="title Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param15"  type="text" label="Enter title" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter title"/> 
  </when>
   </conditional>

<conditional name="source16">
  <param name="source16_source" type="select" label="stats Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param16"  type="text" label="Enter stats" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter stats"/> 
  </when>
   </conditional>

<conditional name="source17">
  <param name="source17_source" type="select" label="exp Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param17"  type="text" label="Enter exp" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter exp"/> 
  </when>
   </conditional>
 </when>
 </conditional>
</inputs>
  <outputs>
    <data format="tabular" name="output" />
  </outputs>
  <help>

.. class:: infomark

**TIP:** About sequence: type is String

.. class:: infomark

**TIP:** About stype: type is String

.. class:: infomark

**TIP:** About program: type is String

.. class:: infomark

**TIP:** About email: type is String

.. class:: infomark

**TIP:** About database: type is String
  </help>
</tool>