Mercurial > repos > ulfschaefer > data_manager_phemost

diff data_manager_conf.xml @ 0:25d4d9f313a0 draft default tip

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author ulfschaefer
date Wed, 13 Jul 2016 05:50:48 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Wed Jul 13 05:50:48 2016 -0400
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/fetch_mlst_data.xml" id="fetch_mlst_data" version="1.0.0">
+        <data_table name="mlst_data">
+            <output>
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="time_stamp" />
+                <column name="file_path" output_ref="out_file" >
+                    <move type="directory">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mlst_data</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mlst_data/${dbkey}/${time_stamp}</value_translation> <!-- Store this value in the final Data Table -->
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>