Mercurial > repos > ulfschaefer > filter_vcf
view filter_vcf.sh @ 11:cd59be4a7fe3 draft default tip
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author | ulfschaefer |
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date | Mon, 21 Dec 2015 11:12:19 -0500 |
parents | 5dfc843979c2 |
children |
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#!/bin/bash OUTPUT=$1 shift VCF=$1 shift FILTERS=$@ FILTERS=$(echo -n $FILTERS | sed 's/ /,/g') DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" export PATH=$PATH:$DIR CMD="filter_vcf.py --vcf $VCF --filters $FILTERS --output $OUTPUT" echo "CMD: "$CMD eval $CMD