# HG changeset patch
# User ulfschaefer
# Date 1450441737 18000
# Node ID ed025c662e59ab29bca78ae0447535168930465e
# Parent  f6d05f9a22bf1d8536bc68483457a2cea6e31423
Uploaded

diff -r f6d05f9a22bf -r ed025c662e59 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Dec 11 09:34:42 2015 -0500
+++ b/tool_dependencies.xml	Fri Dec 18 07:28:57 2015 -0500
@@ -3,17 +3,24 @@
     <package name="python" version="2.7.10">
         <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-	<package name="pyvcf" version="0.6.7">
+    <package name="pyvcf" version="0.6.7">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7.10" />
+                    </repository>
+                </action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python/bin</action>
                 <action type="shell_command">
                     export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
-                    python setup.py install --install-lib $INSTALL_DIR/lib/python
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/lib/python/bin
                 </action>
                 <action type="set_environment">
                     <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="append_to" name="PATH">$INSTALL_DIR/lib/python/bin</environment_variable>
                     <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
                 </action>
             </actions>
@@ -24,5 +31,5 @@
 
             The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
         </readme>
-	</package>
+    </package>
 </tool_dependency>