# HG changeset patch
# User ulfschaefer
# Date 1450435933 18000
# Node ID 586578e137b31aab315d2a9ce1c6b7970adad73a
# Parent  7b2bbbd5bc90b53963f4f0f786b37584efcad9c2
Uploaded

diff -r 7b2bbbd5bc90 -r 586578e137b3 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Dec 18 05:43:15 2015 -0500
+++ b/tool_dependencies.xml	Fri Dec 18 05:52:13 2015 -0500
@@ -8,12 +8,14 @@
             <actions>
                 <action type="download_by_url">https://github.com/jamescasbon/PyVCF/archive/0eb779559e74faa14fae609c8864874ab8321c7e.tar.gz</action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python/bin</action>
                 <action type="shell_command">
                     export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
-                    python setup.py install --install-scripts $INSTALL_DIR/lib/python --install-lib $INSTALL_DIR/lib/python
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/lib/python/bin
                 </action>
                 <action type="set_environment">
                     <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="append_to" name="PATH">$INSTALL_DIR/lib/python/bin</environment_variable>
                     <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
                 </action>
             </actions>