Mercurial > repos > ulfschaefer > phe_samtools_mpileup
comparison phe_samtools_mpileup.xml @ 8:0af0acbd73f7 draft
Uploaded
| author | ulfschaefer |
|---|---|
| date | Mon, 21 Dec 2015 08:57:17 -0500 |
| parents | 5b63d9a21d01 |
| children | 714a4c13d64c |
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| 7:d1b47aeff5e9 | 8:0af0acbd73f7 |
|---|---|
| 1 <tool id="phe_samtools_mpileup" name="PHE MPileup" version="1.0"> | 1 <tool id="phe_samtools_mpileup" name="PHE MPileup" version="1.0"> |
| 2 <description>PHE SNP and indel caller</description> | 2 <description>PHE SNP and indel caller</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1">samtools</requirement> | 4 <requirement type="package" version="1.1">samtools</requirement> |
| 5 <requirement type="package" version="1.3">bcftools</requirement> | |
| 5 </requirements> | 6 </requirements> |
| 6 <command interpreter="bash"> | 7 <command interpreter="bash"> |
| 7 phe_samtools_mpileup.sh $input_bam $ref_file $outvcf | 8 phe_samtools_mpileup.sh $input_bam $ref_file $outvcf |
| 8 </command> | 9 </command> |
| 9 <inputs> | 10 <inputs> |