# HG changeset patch # User ulfschaefer # Date 1450700554 18000 # Node ID 59eca98715b4418a49f940a1149c1124769a3442 # Parent c91df5df0faff4c53acba8a7f1569daad17cb1b0 Deleted selected files diff -r c91df5df0faf -r 59eca98715b4 test-data/in_short.sam --- a/test-data/in_short.sam Mon Dec 21 07:12:34 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10000 +0,0 @@ -@SQ SN:gi|15829254|ref|NC_002695.1| LN:5498450 -@RG ID:test_sample SM:test_sample -@PG ID:bwa PN:bwa VN:0.7.12-r1039 CL:bwa mem -R @RG\tID:test_sample\tSM:test_sample -t 1 ref.fa r1.fastq r2.fastq -HWI-D00151:47:H7926ADXX:1:1101:1645:2045 83 gi|15829254|ref|NC_002695.1| 5459580 60 100M = 5459536 -144 GCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGATCGACAN FFFBFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFBFFFFFBFFFFFFFFFFFFIIIIIIIIIFFIIIIIIIIIIIFIFIIIIIIFIIFFFFFFFFFB<0# NM:i:1 MD:Z:99T0 AS:i:99 XS:i:0 RG:Z:test_sample -HWI-D00151:47:H7926ADXX:1:1101:1645:2045 163 gi|15829254|ref|NC_002695.1| 5459536 60 100M = 5459580 144 CTCTTAGCGCCACGCCCCATAGAGCCGCCAGGCGGATAAAGTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGG BBBFFFFFFFFFFFFIIIIIFIIIIIFIIIFIFFIBFFFFFFFFBFBBBBFFFBFBFFFFFFFFBBBFBBFFBFBFFFFFFFFBBFBFBFFBBBBBBBBB NM:i:0 MD:Z:100 AS:i:100 XS:i:0 RG:Z:test_sample -HWI-D00151:47:H7926ADXX:1:1101:1584:2047 83 gi|15829254|ref|NC_002695.1| 1794502 60 100M = 1794386 -216 GAAATTATTAGCACCACAGTCAGTTTGTGAAAATGTGAAGATATTCAGAAGTTTTATTCAGTCATGATACAGGCATCCTCCGGGATGCCTGTTGTTTTTN BFFFFBBBFFFFFFFFFFFFFFBFFFFFFFFFFFFFIIIIIIIIIFIFIIIFIIIIIFIIIIFBIIFFFFFBIIIFIFBIIIIIIIIFFFFFFFFFF<0# NM:i:1 MD:Z:99G0 AS:i:99 XS:i:37 RG:Z:test_sample -HWI-D00151:47:H7926ADXX:1:1101:1584:2047 163 gi|15829254|ref|NC_002695.1| 1794386 60 96M = 1794502 216 GGGCGGCAGAGGGAAAAAGAATAAAAAAATCCCGCAGAGTTGCGGGGACAGACAAAGATTAACGTTAAGGAGGTATTTTTGTTTCTGGTGCTCGGG B