# HG changeset patch
# User ulfschaefer
# Date 1450711076 18000
# Node ID 714a4c13d64ca92cebc827f4209ec0d6b5ce61f1
# Parent  f78ed0f61f52e756e2833c12a8456a0059f2fdfa
Uploaded

diff -r f78ed0f61f52 -r 714a4c13d64c phe_samtools_mpileup.xml
--- a/phe_samtools_mpileup.xml	Mon Dec 21 10:17:45 2015 -0500
+++ b/phe_samtools_mpileup.xml	Mon Dec 21 10:17:56 2015 -0500
@@ -4,6 +4,11 @@
       <requirement type="package" version="1.1">samtools</requirement>
       <requirement type="package" version="1.3">bcftools</requirement>
   </requirements>
+  <stdio>
+    <!-- Assume anything other than zero is an error -->
+    <exit_code range="1:" />
+    <exit_code range=":-1" />
+  </stdio>
   <command interpreter="bash">
     phe_samtools_mpileup.sh $input_bam $ref_file $outvcf
   </command>