Mercurial > repos > ulfschaefer > phephenix
comparison Galaxy-Workflow-Phenix_workflow.ga @ 1:162c88041ed7 draft
Uploaded
author | ulfschaefer |
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date | Tue, 10 May 2016 05:16:08 -0400 |
parents | |
children | a3f15f50a4af |
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0:cb29f95c7b88 | 1:162c88041ed7 |
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1 { | |
2 "a_galaxy_workflow": "true", | |
3 "annotation": "", | |
4 "format-version": "0.1", | |
5 "name": "Phenix workflow", | |
6 "steps": { | |
7 "0": { | |
8 "annotation": "", | |
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19 "name": "Input dataset", | |
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38 "inputs": [ | |
39 { | |
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41 "name": "R1 fastq" | |
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45 "name": "Input dataset", | |
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63 "input_connections": {}, | |
64 "inputs": [ | |
65 { | |
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67 "name": "R2 fastqs" | |
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81 "type": "data_input", | |
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83 "workflow_outputs": [] | |
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92 "output_name": "output" | |
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96 "output_name": "output" | |
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100 "output_name": "output" | |
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102 }, | |
103 "inputs": [], | |
104 "label": null, | |
105 "name": "Map with BWA-MEM", | |
106 "outputs": [ | |
107 { | |
108 "name": "bam_output", | |
109 "type": "bam" | |
110 } | |
111 ], | |
112 "position": { | |
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115 }, | |
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128 "tool_version": "0.7.12.1", | |
129 "type": "tool", | |
130 "uuid": "e7189b5b-110c-4e8f-ae4e-a85d9e7bf8c3", | |
131 "workflow_outputs": [] | |
132 }, | |
133 "4": { | |
134 "annotation": "", | |
135 "content_id": "toolshed.g2.bx.psu.edu/repos/ulfschaefer/phe_samtools_mpileup/phe_samtools_mpileup/1.0", | |
136 "id": 4, | |
137 "input_connections": { | |
138 "input_bam": { | |
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140 "output_name": "bam_output" | |
141 }, | |
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143 "id": 0, | |
144 "output_name": "output" | |
145 } | |
146 }, | |
147 "inputs": [], | |
148 "label": null, | |
149 "name": "PHE MPileup", | |
150 "outputs": [ | |
151 { | |
152 "name": "outvcf", | |
153 "type": "vcf" | |
154 } | |
155 ], | |
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166 "output_name": "outvcf" | |
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