Mercurial > repos > ulfschaefer > phephenix
comparison vcfs2fasta.xml @ 18:ad82db63197d draft
Uploaded
| author | ulfschaefer |
|---|---|
| date | Thu, 14 Jul 2016 09:49:46 -0400 |
| parents | 76f76eee9130 |
| children | 9c63ab34838d |
comparison
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| 17:f7494340ae7f | 18:ad82db63197d |
|---|---|
| 53 #else | 53 #else |
| 54 NOTTHERE | 54 NOTTHERE |
| 55 #end if | 55 #end if |
| 56 #if str($exclude_cond.exclude) == "yes": | 56 #if str($exclude_cond.exclude) == "yes": |
| 57 $exclude_cond.ex_bed | 57 $exclude_cond.ex_bed |
| 58 #else | |
| 59 NOTTHERE | |
| 60 #end if | |
| 61 #if $withstats: | |
| 62 $statsfile | |
| 58 #else | 63 #else |
| 59 NOTTHERE | 64 NOTTHERE |
| 60 #end if | 65 #end if |
| 61 #for $i, $input_vcf in enumerate( $input_vcfs ): | 66 #for $i, $input_vcf in enumerate( $input_vcfs ): |
| 62 "${input_vcf}" | 67 "${input_vcf}" |
| 144 <when value="yes"> | 149 <when value="yes"> |
| 145 <param name="ex_bed" type="data" format="bed" label="Exclude regions bed file" help="bed format"/> | 150 <param name="ex_bed" type="data" format="bed" label="Exclude regions bed file" help="bed format"/> |
| 146 </when> | 151 </when> |
| 147 </conditional> | 152 </conditional> |
| 148 | 153 |
| 154 <param name="withstats" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Write stats to separate file?" /> | |
| 155 | |
| 149 </inputs> | 156 </inputs> |
| 150 | 157 |
| 151 <outputs> | 158 <outputs> |
| 152 <data format="fasta" name="output" label="${tool.name} on ${on_string}: FASTA file" /> | 159 <data format="fasta" name="output" label="${tool.name} on ${on_string}: FASTA file" /> |
| 153 </outputs> | 160 </outputs> |