view test-data/test_output.vcf @ 0:cb29f95c7b88 draft

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##fileformat=VCFv4.1
##GATKCommandLine=<ID=SelectVariants,Version=2.6-5-gba531bd,Date="Thu May 22 09:24:36 BST 2014",Epoch=1400747076888,CommandLineOptions="analysis_type=SelectVariants input_file=[] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/phengs/galaxy/database/tmp/tmp-gatk-lMh4vi/gatk_input.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/phengs/galaxy/database/tmp/tmp-gatk-lMh4vi/input_variant.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] select_expressions=[] excludeNonVariants=false excludeFiltered=false restrictAllelesTo=ALL keepOriginalAC=false mendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[SNP] keepIDs=null fullyDecode=false forceGenotypesDecode=false justRead=false maxIndelSize=2147483647 ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##GATKCommandLine=<ID=UnifiedGenotyper,Version=2.6-5-gba531bd,Date="Thu May 22 09:10:24 BST 2014",Epoch=1400746224902,CommandLineOptions="analysis_type=UnifiedGenotyper input_file=[/phengs/galaxy/database/tmp/tmp-gatk-x7S0pF/gatk_input_0.bam] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[BadCigar] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/phengs/galaxy/database/tmp/tmp-gatk-x7S0pF/gatk_input.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=NONE downsample_to_fraction=null downsample_to_coverage=null baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=STRICT remove_program_records=false keep_program_records=false unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=2 num_cpu_threads_per_data_thread=6 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false genotype_likelihoods_model=BOTH pcr_error_rate=1.0E-4 computeSLOD=false annotateNDA=false pair_hmm_implementation=LOGLESS_CACHING min_base_quality_score=17 max_deletion_fraction=0.05 allSitePLs=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=6 input_prior=[] contamination_fraction_to_filter=0.05 contamination_fraction_per_sample_file=null p_nonref_model=EXACT_INDEPENDENT exactcallslog=null dbsnp=(RodBinding name= source=UNBOUND) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null annotation=[] excludeAnnotation=[] filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##reference=file:///phengs/galaxy/database/tmp/tmp-gatk-lMh4vi/gatk_input.fasta
##source=SelectVariants
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
##INFO=<ID=BasesToClosestSNP,Number=1,Type=Integer,Description="Number of bases to the closest SNP in the file.">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=mq_score:50,Description="Filter sites by Mapping Quality (MQ) score. (MQ > 50)">
##FILTER=<ID=gq_score:10,Description="Filter sites by GQ score. (GQ > 10)">
##FILTER=<ID=uncall_gt:,Description="Filter uncallable genotypes (GT != ./. )">
##FILTER=<ID=min_depth:100,Description="Filter sites by depth. (DP > 100)">
##contig=<ID=gi|15829254|ref|NC_002695.1|,length=5498450>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	H133840545_1
gi|15829254|ref|NC_002695.1|	6065	.	C	T	5384.77	PASS	AC=2;AF=1.0;AN=2;DP=161;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.45;BasesToClosestSNP=4136	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5413,427,0
gi|15829254|ref|NC_002695.1|	10201	.	C	T	5819.77	PASS	AC=2;AF=1.0;AN=2;DP=154;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=29.21;BasesToClosestSNP=4136	GT:AD:DP:GQ:PL	1/1:0,154:154:99:5848,451,0
gi|15829254|ref|NC_002695.1|	14114	.	A	T	6039.77	PASS	AC=2;AF=1.0;AN=2;DP=166;Dels=0.0;FS=0.0;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.07;BasesToClosestSNP=3913	GT:AD:DP:GQ:PL	1/1:0,166:166:99:6068,469,0
gi|15829254|ref|NC_002695.1|	15404	.	T	.	17.31	LowQual;min_depth:100	AN=2;DP=33;MQ=60.0;MQ0=0	GT:DP	0/0:32
gi|15829254|ref|NC_002695.1|	18711	.	A	C	3657.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=99;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.28;BasesToClosestSNP=4597	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3686,274,0
gi|15829254|ref|NC_002695.1|	18968	.	G	A	6350.77	PASS	AC=2;AF=1.0;AN=2;DP=181;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.07;BasesToClosestSNP=257	GT:AD:DP:GQ:PL	1/1:0,181:181:99:6379,470,0
gi|15829254|ref|NC_002695.1|	47847	.	C	T	4038.77	PASS	AC=2;AF=1.0;AN=2;DP=113;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=24.05;BasesToClosestSNP=28879	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4067,313,0
gi|15829254|ref|NC_002695.1|	48272	.	A	G	3836.77	PASS	AC=2;AF=1.0;AN=2;DP=106;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=31.18;BasesToClosestSNP=99	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3865,298,0
gi|15829254|ref|NC_002695.1|	48371	.	G	A	4075.77	PASS	AC=2;AF=1.0;AN=2;DP=106;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=25.66;BasesToClosestSNP=99	GT:AD:DP:GQ:PL	1/1:0,106:106:99:4104,310,0
gi|15829254|ref|NC_002695.1|	51967	.	C	T	3137.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=97;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.35;BasesToClosestSNP=1748	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3166,259,0
gi|15829254|ref|NC_002695.1|	53715	.	C	T	3985.77	PASS	AC=2;AF=1.0;AN=2;DP=110;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.04;BasesToClosestSNP=1748	GT:AD:DP:GQ:PL	1/1:0,110:110:99:4014,301,0
gi|15829254|ref|NC_002695.1|	57677	.	T	C	3587.77	PASS	AC=2;AF=1.0;AN=2;DP=106;Dels=0.0;FS=0.0;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.85;BasesToClosestSNP=3962	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3616,283,0
gi|15829254|ref|NC_002695.1|	63127	.	T	G	4466.77	PASS	AC=2;AF=1.0;AN=2;DP=117;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.14;BasesToClosestSNP=5450	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4495,337,0
gi|15829254|ref|NC_002695.1|	64020	.	A	C	872.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=0.689;DP=248;Dels=0.0;FS=36.815;HaplotypeScore=3.9529;MLEAC=1;MLEAF=0.5;MQ=57.45;MQ0=0;MQRankSum=-2.381;QD=3.52;ReadPosRankSum=-10.71;BasesToClosestSNP=47	GT:AD:DP:GQ:PL	0/1:185,63:236:99:901,0,5685
gi|15829254|ref|NC_002695.1|	64067	.	G	C	2096.77	PASS	AC=1;AF=0.5;AN=2;BaseQRankSum=-2.146;DP=209;Dels=0.0;FS=153.841;HaplotypeScore=4.9521;MLEAC=1;MLEAF=0.5;MQ=57.15;MQ0=0;MQRankSum=4.711;QD=10.03;ReadPosRankSum=-7.39;BasesToClosestSNP=47	GT:AD:DP:GQ:PL	0/1:137,72:199:99:2125,0,4003
gi|15829254|ref|NC_002695.1|	70555	.	C	T	2890.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=85;Dels=0.01;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.01;BasesToClosestSNP=6488	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2919,229,0
gi|15829254|ref|NC_002695.1|	85412	.	G	A	5899.77	PASS	AC=2;AF=1.0;AN=2;DP=160;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.27;BasesToClosestSNP=14857	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5928,445,0
gi|15829254|ref|NC_002695.1|	88701	.	T	C	848.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=24;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.62;BasesToClosestSNP=3289	GT:AD:DP:GQ:PL	1/1:0,24:24:66:877,66,0
gi|15829254|ref|NC_002695.1|	93390	.	T	G	3211.76	min_depth:100	AC=2;AF=1.0;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.0;FS=0.0;HaplotypeScore=3.5473;MLEAC=2;MLEAF=1.0;MQ=59.89;MQ0=0;MQRankSum=1.653;QD=34.49;ReadPosRankSum=1.015;BasesToClosestSNP=4689	GT:AD:DP:GQ:PL	1/1:1,86:86:99:3240,247,0
gi|15829254|ref|NC_002695.1|	120398	.	G	A	4149.77	PASS	AC=2;AF=1.0;AN=2;DP=109;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=28.29;BasesToClosestSNP=13502	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4178,313,0
gi|15829254|ref|NC_002695.1|	133900	.	A	G	4414.77	PASS	AC=2;AF=1.0;AN=2;DP=122;Dels=0.0;FS=0.0;HaplotypeScore=1.9987;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=30.13;BasesToClosestSNP=13502	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4443,340,0
gi|15829254|ref|NC_002695.1|	142584	.	T	C	4353.77	PASS	AC=2;AF=1.0;AN=2;DP=116;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=27.86;BasesToClosestSNP=295	GT:AD:DP:GQ:PL	1/1:0,116:116:99:4382,331,0
gi|15829254|ref|NC_002695.1|	142879	.	C	A	4885.77	PASS	AC=2;AF=1.0;AN=2;DP=140;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.9;BasesToClosestSNP=295	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4914,376,0
gi|15829254|ref|NC_002695.1|	157462	.	C	T	4419.77	PASS	AC=2;AF=1.0;AN=2;DP=121;Dels=0.0;FS=0.0;HaplotypeScore=1.6644;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=28.08;BasesToClosestSNP=3210	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4448,337,0
gi|15829254|ref|NC_002695.1|	160672	.	T	C	5929.77	PASS	AC=2;AF=1.0;AN=2;DP=159;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=27.52;BasesToClosestSNP=3210	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5958,448,0
gi|15829254|ref|NC_002695.1|	165369	.	C	T	4012.77	PASS	AC=2;AF=1.0;AN=2;DP=116;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.59;BasesToClosestSNP=578	GT:AD:DP:GQ:PL	1/1:0,116:116:99:4041,304,0
gi|15829254|ref|NC_002695.1|	165947	.	A	C	2779.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=85;Dels=0.0;FS=0.0;HaplotypeScore=4.3247;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.7;BasesToClosestSNP=578	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2808,229,0
gi|15829254|ref|NC_002695.1|	171915	.	T	C	3539.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=96;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=24.7;BasesToClosestSNP=5968	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3568,277,0
gi|15829254|ref|NC_002695.1|	180160	.	T	C	4020.77	PASS	AC=2;AF=1.0;AN=2;DP=109;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=30.54;BasesToClosestSNP=8245	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4049,307,0
gi|15829254|ref|NC_002695.1|	184717	.	T	C	5621.77	PASS	AC=2;AF=1.0;AN=2;DP=151;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=25.05;BasesToClosestSNP=1393	GT:AD:DP:GQ:PL	1/1:0,151:151:99:5650,421,0
gi|15829254|ref|NC_002695.1|	186110	.	C	T	5816.77	PASS	AC=2;AF=1.0;AN=2;DP=155;Dels=0.0;FS=0.0;HaplotypeScore=1.6644;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.83;BasesToClosestSNP=1393	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5845,439,0
gi|15829254|ref|NC_002695.1|	205552	.	C	T	3913.77	PASS	AC=2;AF=1.0;AN=2;DP=112;Dels=0.0;FS=0.0;HaplotypeScore=2.6603;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.94;BasesToClosestSNP=11905	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3942,304,0
gi|15829254|ref|NC_002695.1|	217457	.	A	T	3215.74	min_depth:100	AC=2;AF=1.0;AN=2;DP=88;Dels=0.0;FS=0.0;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=30.68;BasesToClosestSNP=11905	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3244,247,0
gi|15829254|ref|NC_002695.1|	218091	.	T	C	3066.77	min_depth:100	AC=2;AF=1.0;AN=2;DP=81;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=28.01;BasesToClosestSNP=634	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3095,232,0
gi|15829254|ref|NC_002695.1|	226900	.	A	.	284.23	mq_score:50	AN=2;DP=106;MQ=49.79;MQ0=17	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226901	.	A	.	284.23	mq_score:50	AN=2;DP=106;MQ=49.79;MQ0=17	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226902	.	G	.	278.23	mq_score:50	AN=2;DP=105;MQ=49.34;MQ0=18	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226903	.	A	.	275.23	mq_score:50	AN=2;DP=104;MQ=49.22;MQ0=18	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226904	.	G	.	275.23	mq_score:50	AN=2;DP=106;MQ=48.91;MQ0=19	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226905	.	G	.	275.23	mq_score:50	AN=2;DP=105;MQ=48.79;MQ0=19	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226906	.	A	.	284.23	mq_score:50	AN=2;DP=107;MQ=48.64;MQ0=19	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	226907	.	A	.	278.23	mq_score:50	AN=2;DP=107;MQ=48.64;MQ0=19	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	226908	.	A	.	284.23	mq_score:50	AN=2;DP=107;MQ=48.64;MQ0=19	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	226909	.	G	.	281.23	mq_score:50	AN=2;DP=109;MQ=48.19;MQ0=21	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	226910	.	C	.	275.23	mq_score:50	AN=2;DP=111;MQ=47.76;MQ0=23	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	226911	.	G	.	281.23	mq_score:50	AN=2;DP=112;MQ=47.69;MQ0=23	GT:DP	0/0:112
gi|15829254|ref|NC_002695.1|	226912	.	T	.	275.23	mq_score:50	AN=2;DP=109;MQ=47.12;MQ0=23	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	226913	.	A	.	269.23	mq_score:50	AN=2;DP=107;MQ=46.84;MQ0=23	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226914	.	A	.	260.23	mq_score:50	AN=2;DP=115;MQ=44.48;MQ0=33	GT:DP	0/0:112
gi|15829254|ref|NC_002695.1|	226915	.	T	.	269.23	mq_score:50	AN=2;DP=115;MQ=44.48;MQ0=33	GT:DP	0/0:115
gi|15829254|ref|NC_002695.1|	226916	.	A	.	266.23	mq_score:50	AN=2;DP=118;MQ=43.91;MQ0=36	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	226917	.	T	.	272.23	mq_score:50	AN=2;DP=120;MQ=43.85;MQ0=36	GT:DP	0/0:120
gi|15829254|ref|NC_002695.1|	226918	.	A	.	215.23	mq_score:50;min_depth:100	AN=2;DP=102;MQ=40.35;MQ0=36	GT:DP	0/0:99
gi|15829254|ref|NC_002695.1|	226919	.	C	.	227.23	mq_score:50	AN=2;DP=103;MQ=40.35;MQ0=36	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	226920	.	G	.	218.23	mq_score:50	AN=2;DP=101;MQ=39.86;MQ0=36	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226921	.	C	.	218.23	mq_score:50	AN=2;DP=101;MQ=39.86;MQ0=36	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226922	.	C	.	209.23	mq_score:50	AN=2;DP=101;MQ=39.61;MQ0=36	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226923	.	A	.	199.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=38.82;MQ0=36	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	226924	.	C	.	206.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=38.34;MQ0=37	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	226925	.	C	.	203.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=37.76;MQ0=37	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	226926	.	T	.	197.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=37.57;MQ0=38	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	226927	.	C	.	206.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=37.59;MQ0=38	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	226928	.	G	.	206.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=37.59;MQ0=38	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	226929	.	C	.	203.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=37.13;MQ0=39	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	226930	.	G	.	200.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=36.86;MQ0=39	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	226931	.	A	.	197.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=36.55;MQ0=39	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	226932	.	C	.	197.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=36.55;MQ0=39	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	226933	.	A	.	184.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=34.96;MQ0=39	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	226934	.	G	.	184.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=34.96;MQ0=39	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	226935	.	T	.	178.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=34.26;MQ0=39	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	226936	.	G	.	178.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=34.26;MQ0=39	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	226937	.	A	.	172.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=34.26;MQ0=39	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	226938	.	G	.	178.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=33.96;MQ0=41	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	226939	.	C	.	181.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=33.96;MQ0=41	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	226940	.	T	.	187.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=34.28;MQ0=41	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	226941	.	G	.	187.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=34.01;MQ0=41	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	226942	.	A	.	188.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=34.01;MQ0=41	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	226943	.	A	.	181.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=33.66;MQ0=41	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	226944	.	A	.	181.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=33.66;MQ0=41	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	226945	.	G	.	175.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=32.54;MQ0=41	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	226946	.	C	.	166.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=32.54;MQ0=41	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	226947	.	C	.	175.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=32.54;MQ0=41	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	226948	.	G	.	175.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=32.54;MQ0=41	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	226949	.	C	.	166.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=31.11;MQ0=42	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	226950	.	G	.	166.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=31.11;MQ0=42	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	226951	.	T	.	178.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=31.65;MQ0=42	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	226952	.	C	.	184.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=31.75;MQ0=42	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	226953	.	G	.	203.23	mq_score:50	AN=2;DP=101;MQ=32.39;MQ0=42	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226954	.	C	.	203.23	mq_score:50	AN=2;DP=102;MQ=31.72;MQ0=44	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	226955	.	A	.	200.23	mq_score:50	AN=2;DP=102;MQ=31.72;MQ0=44	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	226956	.	A	.	206.23	mq_score:50	AN=2;DP=104;MQ=31.9;MQ0=44	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226957	.	C	.	206.23	mq_score:50	AN=2;DP=104;MQ=31.9;MQ0=44	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226958	.	T	.	209.23	mq_score:50	AN=2;DP=102;MQ=32.21;MQ0=42	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	226959	.	G	.	215.23	mq_score:50	AN=2;DP=106;MQ=32.07;MQ0=44	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226960	.	C	.	206.23	mq_score:50	AN=2;DP=106;MQ=31.06;MQ0=46	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226961	.	T	.	197.23	mq_score:50	AN=2;DP=104;MQ=30.31;MQ0=46	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226962	.	C	.	203.23	mq_score:50	AN=2;DP=105;MQ=30.17;MQ0=47	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226963	.	T	.	191.23	mq_score:50	AN=2;DP=101;MQ=29.49;MQ0=47	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226964	.	T	.	191.23	mq_score:50	AN=2;DP=101;MQ=29.49;MQ0=47	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226965	.	T	.	191.23	mq_score:50	AN=2;DP=101;MQ=29.49;MQ0=47	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226966	.	A	.	191.23	mq_score:50	AN=2;DP=101;MQ=29.63;MQ0=47	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226967	.	A	.	203.23	mq_score:50	AN=2;DP=105;MQ=30.09;MQ0=47	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226968	.	C	.	206.23	mq_score:50	AN=2;DP=108;MQ=29.92;MQ0=49	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226969	.	A	.	194.23	mq_score:50	AN=2;DP=104;MQ=29.2;MQ0=49	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226970	.	A	.	194.23	mq_score:50	AN=2;DP=106;MQ=28.92;MQ0=51	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226971	.	T	.	188.23	mq_score:50	AN=2;DP=105;MQ=28.42;MQ0=52	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226972	.	T	.	188.23	mq_score:50	AN=2;DP=108;MQ=28.02;MQ0=55	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226973	.	T	.	187.23	mq_score:50	AN=2;DP=108;MQ=28.02;MQ0=55	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226974	.	A	.	188.23	mq_score:50	AN=2;DP=108;MQ=28.02;MQ0=55	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226975	.	T	.	185.23	mq_score:50	AN=2;DP=108;MQ=28.02;MQ0=55	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226976	.	C	.	188.23	mq_score:50	AN=2;DP=108;MQ=28.02;MQ0=55	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226977	.	A	.	184.23	mq_score:50	AN=2;DP=107;MQ=27.88;MQ0=55	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	226978	.	G	.	184.23	mq_score:50	AN=2;DP=108;MQ=27.76;MQ0=56	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226979	.	A	.	181.23	mq_score:50	AN=2;DP=107;MQ=27.62;MQ0=56	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	226980	.	C	.	181.23	mq_score:50	AN=2;DP=109;MQ=27.36;MQ0=58	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	226981	.	A	.	172.23	mq_score:50	AN=2;DP=106;MQ=26.92;MQ0=58	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226982	.	A	.	178.23	mq_score:50	AN=2;DP=108;MQ=27.22;MQ0=58	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226983	.	T	.	178.23	mq_score:50	AN=2;DP=109;MQ=27.09;MQ0=59	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	226984	.	C	.	178.23	mq_score:50	AN=2;DP=113;MQ=26.61;MQ0=63	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	226985	.	T	.	175.23	mq_score:50	AN=2;DP=110;MQ=26.7;MQ0=61	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	226986	.	G	.	175.23	mq_score:50	AN=2;DP=111;MQ=26.58;MQ0=62	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	226987	.	T	.	172.23	mq_score:50	AN=2;DP=108;MQ=26.67;MQ0=60	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226988	.	G	.	172.23	mq_score:50	AN=2;DP=108;MQ=26.67;MQ0=60	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	226989	.	T	.	169.23	mq_score:50	AN=2;DP=105;MQ=26.76;MQ0=58	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226990	.	G	.	166.23	mq_score:50	AN=2;DP=105;MQ=26.76;MQ0=58	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226991	.	G	.	166.23	mq_score:50	AN=2;DP=105;MQ=26.48;MQ0=59	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226992	.	G	.	157.23	mq_score:50	AN=2;DP=104;MQ=26.31;MQ0=59	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226993	.	C	.	160.23	mq_score:50	AN=2;DP=105;MQ=26.19;MQ0=60	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226994	.	A	.	151.23	mq_score:50	AN=2;DP=104;MQ=26.31;MQ0=59	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	226995	.	C	.	157.23	mq_score:50	AN=2;DP=106;MQ=25.48;MQ0=63	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226996	.	T	.	154.23	mq_score:50	AN=2;DP=104;MQ=25.42;MQ0=62	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	226997	.	C	.	151.23	mq_score:50	AN=2;DP=106;MQ=25.18;MQ0=64	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	226998	.	G	.	151.23	mq_score:50	AN=2;DP=105;MQ=25.3;MQ0=63	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	226999	.	A	.	154.23	mq_score:50	AN=2;DP=104;MQ=25.42;MQ0=62	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227000	.	A	.	151.23	mq_score:50;min_depth:100	AN=2;DP=103;MQ=25.24;MQ0=62	GT:DP	0/0:99
gi|15829254|ref|NC_002695.1|	227001	.	G	.	151.23	mq_score:50	AN=2;DP=103;MQ=25.24;MQ0=62	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227002	.	A	.	151.23	mq_score:50	AN=2;DP=102;MQ=25.36;MQ0=61	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227003	.	T	.	148.23	mq_score:50	AN=2;DP=102;MQ=25.36;MQ0=61	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227004	.	A	.	142.23	mq_score:50	AN=2;DP=100;MQ=25.3;MQ0=60	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227005	.	C	.	148.23	mq_score:50	AN=2;DP=100;MQ=25.3;MQ0=60	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227006	.	G	.	148.23	mq_score:50	AN=2;DP=100;MQ=25.3;MQ0=60	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227007	.	G	.	148.23	mq_score:50	AN=2;DP=100;MQ=25.3;MQ0=60	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227008	.	A	.	151.23	mq_score:50	AN=2;DP=101;MQ=25.49;MQ0=60	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227009	.	T	.	151.23	mq_score:50	AN=2;DP=102;MQ=25.36;MQ0=61	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227010	.	T	.	151.23	mq_score:50	AN=2;DP=102;MQ=25.36;MQ0=61	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227011	.	C	.	148.23	mq_score:50	AN=2;DP=103;MQ=24.93;MQ0=63	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227012	.	T	.	145.23	mq_score:50	AN=2;DP=102;MQ=24.73;MQ0=63	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227013	.	T	.	145.23	mq_score:50	AN=2;DP=102;MQ=24.73;MQ0=63	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227014	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=25.76;MQ0=55	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227015	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=25.9;MQ0=54	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227016	.	C	.	145.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=26.38;MQ0=52	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227017	.	G	.	142.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=25.99;MQ0=52	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227018	.	T	.	142.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=25.99;MQ0=52	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227019	.	C	.	142.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=25.99;MQ0=52	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227020	.	G	.	145.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=26.04;MQ0=53	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227021	.	C	.	148.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=26.38;MQ0=52	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227022	.	A	.	142.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=26.19;MQ0=52	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227023	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=26.19;MQ0=52	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227024	.	G	.	145.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=26.33;MQ0=51	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227025	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=26.33;MQ0=51	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227026	.	C	.	145.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=26.33;MQ0=51	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227027	.	G	.	142.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=25.99;MQ0=52	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227028	.	A	.	142.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=25.99;MQ0=52	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227029	.	A	.	142.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=26.14;MQ0=51	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227030	.	A	.	142.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=25.99;MQ0=52	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227031	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=25.76;MQ0=55	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227032	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=25.36;MQ0=58	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227033	.	T	.	145.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=25.23;MQ0=59	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227034	.	G	.	145.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=25.23;MQ0=59	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227035	.	A	.	145.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=25.23;MQ0=59	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227036	.	A	.	148.23	mq_score:50;min_depth:100	AN=2;DP=99;MQ=25.43;MQ0=59	GT:DP	0/0:99
gi|15829254|ref|NC_002695.1|	227037	.	T	.	148.23	mq_score:50	AN=2;DP=100;MQ=25.61;MQ0=59	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227038	.	A	.	142.23	mq_score:50;min_depth:100	AN=2;DP=99;MQ=25.43;MQ0=59	GT:DP	0/0:99
gi|15829254|ref|NC_002695.1|	227039	.	C	.	148.23	mq_score:50	AN=2;DP=101;MQ=25.49;MQ0=60	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227040	.	C	.	142.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=24.91;MQ0=60	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227041	.	A	.	139.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=24.7;MQ0=60	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227042	.	A	.	139.23	mq_score:50	AN=2;DP=100;MQ=24.33;MQ0=63	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227043	.	G	.	139.23	mq_score:50	AN=2;DP=105;MQ=23.74;MQ0=68	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227044	.	T	.	139.23	mq_score:50	AN=2;DP=108;MQ=23.41;MQ0=71	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227045	.	C	.	139.23	mq_score:50	AN=2;DP=108;MQ=23.41;MQ0=71	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227046	.	T	.	139.23	mq_score:50	AN=2;DP=108;MQ=23.41;MQ0=71	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227047	.	C	.	139.23	mq_score:50	AN=2;DP=108;MQ=23.41;MQ0=71	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227048	.	A	.	139.23	mq_score:50	AN=2;DP=108;MQ=23.41;MQ0=71	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227049	.	A	.	136.23	mq_score:50	AN=2;DP=107;MQ=23.2;MQ0=71	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227050	.	G	.	136.23	mq_score:50	AN=2;DP=107;MQ=23.2;MQ0=71	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227051	.	A	.	115.23	mq_score:50	AN=2;DP=100;MQ=21.54;MQ0=71	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227052	.	G	.	115.23	mq_score:50	AN=2;DP=100;MQ=21.54;MQ0=71	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227053	.	T	.	100.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=20.43;MQ0=68	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227054	.	G	.	103.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=20.85;MQ0=67	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227055	.	A	.	106.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=20.71;MQ0=71	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227056	.	A	.	106.23	mq_score:50	AN=2;DP=102;MQ=19.96;MQ0=76	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227057	.	C	.	103.23	mq_score:50	AN=2;DP=104;MQ=19.76;MQ0=78	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227058	.	A	.	100.23	mq_score:50	AN=2;DP=106;MQ=19.19;MQ0=81	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227059	.	C	.	100.23	mq_score:50	AN=2;DP=105;MQ=18.88;MQ0=81	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227060	.	G	.	100.23	mq_score:50	AN=2;DP=103;MQ=19.06;MQ0=79	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227061	.	T	.	97.23	mq_score:50	AN=2;DP=103;MQ=19.06;MQ0=79	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227062	.	A	.	100.23	mq_score:50	AN=2;DP=102;MQ=19.15;MQ0=78	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227063	.	A	.	97.23	mq_score:50	AN=2;DP=106;MQ=18.79;MQ0=82	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227064	.	T	.	97.23	mq_score:50	AN=2;DP=106;MQ=18.79;MQ0=82	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227065	.	T	.	100.23	mq_score:50	AN=2;DP=108;MQ=18.62;MQ0=84	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227066	.	C	.	97.23	mq_score:50	AN=2;DP=106;MQ=18.38;MQ0=83	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227067	.	A	.	79.23	mq_score:50;min_depth:100	AN=2;DP=99;MQ=16.76;MQ0=81	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227068	.	T	.	82.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=16.85;MQ0=80	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227069	.	T	.	82.23	mq_score:50;min_depth:100	AN=2;DP=99;MQ=16.76;MQ0=81	GT:DP	0/0:99
gi|15829254|ref|NC_002695.1|	227070	.	A	.	82.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=16.94;MQ0=79	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227071	.	C	.	82.23	mq_score:50;min_depth:100	AN=2;DP=95;MQ=17.11;MQ0=77	GT:DP	0/0:95
gi|15829254|ref|NC_002695.1|	227072	.	G	.	82.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.3;MQ0=75	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227073	.	A	.	82.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.3;MQ0=75	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227074	.	A	.	82.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.3;MQ0=75	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227075	.	G	.	82.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=16.94;MQ0=79	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227076	.	T	.	82.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=16.94;MQ0=79	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227077	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=17.33;MQ0=79	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227078	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=17.42;MQ0=78	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227079	.	A	.	85.23	mq_score:50	AN=2;DP=102;MQ=16.98;MQ0=83	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227080	.	A	.	85.23	mq_score:50	AN=2;DP=100;MQ=17.15;MQ0=81	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227081	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=99;MQ=17.24;MQ0=80	GT:DP	0/0:99
gi|15829254|ref|NC_002695.1|	227082	.	T	.	76.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=16.44;MQ0=80	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227083	.	C	.	79.23	mq_score:50;min_depth:100	AN=2;DP=95;MQ=16.61;MQ0=78	GT:DP	0/0:95
gi|15829254|ref|NC_002695.1|	227084	.	T	.	79.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=16.79;MQ0=76	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227085	.	T	.	79.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=16.79;MQ0=76	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227086	.	T	.	79.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=16.7;MQ0=77	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227087	.	G	.	76.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=16.7;MQ0=77	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227088	.	A	.	79.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=16.7;MQ0=77	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227089	.	G	.	76.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=16.79;MQ0=76	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227090	.	C	.	79.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=16.79;MQ0=76	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227091	.	A	.	76.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=16.45;MQ0=75	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227092	.	T	.	76.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=16.45;MQ0=75	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227093	.	C	.	76.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=16.63;MQ0=73	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227094	.	A	.	76.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=16.73;MQ0=72	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227095	.	A	.	73.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=17.02;MQ0=69	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227096	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=17.02;MQ0=69	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227097	.	C	.	76.23	mq_score:50;min_depth:100	AN=2;DP=86;MQ=16.92;MQ0=70	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	227098	.	T	.	76.23	mq_score:50;min_depth:100	AN=2;DP=86;MQ=16.92;MQ0=70	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	227099	.	T	.	73.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=17.02;MQ0=69	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227100	.	T	.	73.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=17.02;MQ0=69	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227101	.	T	.	76.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=17.02;MQ0=69	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227102	.	A	.	79.23	mq_score:50;min_depth:100	AN=2;DP=86;MQ=17.46;MQ0=69	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	227103	.	A	.	76.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=17.57;MQ0=68	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227104	.	A	.	82.23	mq_score:50;min_depth:100	AN=2;DP=86;MQ=17.99;MQ0=68	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	227105	.	T	.	79.23	mq_score:50;min_depth:100	AN=2;DP=86;MQ=17.99;MQ0=68	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	227106	.	T	.	73.23	mq_score:50;min_depth:100	AN=2;DP=84;MQ=17.12;MQ0=68	GT:DP	0/0:84
gi|15829254|ref|NC_002695.1|	227107	.	G	.	73.23	mq_score:50;min_depth:100	AN=2;DP=84;MQ=17.12;MQ0=68	GT:DP	0/0:84
gi|15829254|ref|NC_002695.1|	227108	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=83;MQ=16.66;MQ0=68	GT:DP	0/0:83
gi|15829254|ref|NC_002695.1|	227109	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=80;MQ=16.97;MQ0=65	GT:DP	0/0:80
gi|15829254|ref|NC_002695.1|	227110	.	G	.	73.23	mq_score:50;min_depth:100	AN=2;DP=85;MQ=16.46;MQ0=70	GT:DP	0/0:85
gi|15829254|ref|NC_002695.1|	227111	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=83;MQ=16.66;MQ0=68	GT:DP	0/0:83
gi|15829254|ref|NC_002695.1|	227112	.	G	.	70.23	mq_score:50;min_depth:100	AN=2;DP=86;MQ=16.36;MQ0=71	GT:DP	0/0:86
gi|15829254|ref|NC_002695.1|	227113	.	T	.	70.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=16.18;MQ0=73	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227114	.	T	.	73.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=16.18;MQ0=73	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227115	.	T	.	73.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=15.99;MQ0=75	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227116	.	G	.	70.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=15.52;MQ0=75	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227117	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=15.52;MQ0=75	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227118	.	T	.	70.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=15.34;MQ0=77	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227119	.	C	.	67.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=14.84;MQ0=77	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227120	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=15.26;MQ0=78	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227121	.	T	.	67.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=14.76;MQ0=78	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227122	.	G	.	76.23	mq_score:50	AN=2;DP=101;MQ=15.3;MQ0=85	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227123	.	G	.	76.23	mq_score:50	AN=2;DP=101;MQ=15.3;MQ0=85	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227124	.	C	.	76.23	mq_score:50	AN=2;DP=101;MQ=15.3;MQ0=85	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227125	.	T	.	82.23	mq_score:50	AN=2;DP=104;MQ=16.07;MQ0=86	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227126	.	C	.	82.23	mq_score:50	AN=2;DP=106;MQ=15.92;MQ0=88	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227127	.	A	.	82.23	mq_score:50	AN=2;DP=107;MQ=15.84;MQ0=89	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227128	.	G	.	82.23	mq_score:50	AN=2;DP=107;MQ=15.84;MQ0=89	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227129	.	A	.	79.23	mq_score:50	AN=2;DP=106;MQ=15.92;MQ0=88	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227130	.	T	.	85.23	mq_score:50	AN=2;DP=106;MQ=16.38;MQ0=87	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227131	.	T	.	85.23	mq_score:50	AN=2;DP=105;MQ=16.46;MQ0=86	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227132	.	G	.	82.23	mq_score:50	AN=2;DP=105;MQ=16.46;MQ0=86	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227133	.	A	.	85.23	mq_score:50	AN=2;DP=105;MQ=16.46;MQ0=86	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227134	.	A	.	85.23	mq_score:50	AN=2;DP=106;MQ=16.38;MQ0=87	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227135	.	C	.	85.23	mq_score:50	AN=2;DP=106;MQ=16.38;MQ0=87	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227136	.	G	.	76.23	mq_score:50	AN=2;DP=104;MQ=15.58;MQ0=87	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227137	.	C	.	73.23	mq_score:50	AN=2;DP=102;MQ=15.23;MQ0=86	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227138	.	T	.	76.23	mq_score:50	AN=2;DP=100;MQ=15.38;MQ0=84	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227139	.	G	.	76.23	mq_score:50	AN=2;DP=100;MQ=15.38;MQ0=84	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227140	.	G	.	76.23	mq_score:50	AN=2;DP=100;MQ=15.38;MQ0=84	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227141	.	C	.	76.23	mq_score:50	AN=2;DP=100;MQ=15.38;MQ0=84	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227142	.	G	.	76.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=15.61;MQ0=81	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227143	.	G	.	76.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=15.95;MQ0=77	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227144	.	C	.	76.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=16.03;MQ0=76	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227145	.	A	.	76.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=15.95;MQ0=77	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227146	.	G	.	76.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=15.61;MQ0=81	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227147	.	G	.	76.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=15.61;MQ0=81	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227148	.	C	.	73.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=15.7;MQ0=80	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227149	.	C	.	76.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=15.7;MQ0=80	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227150	.	T	.	76.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=15.7;MQ0=80	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227151	.	A	.	76.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=15.53;MQ0=82	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227152	.	A	.	76.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=15.53;MQ0=82	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227153	.	C	.	76.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=15.53;MQ0=82	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227154	.	A	.	73.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=15.08;MQ0=82	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227155	.	C	.	73.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=15.16;MQ0=81	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227156	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=15.26;MQ0=78	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227157	.	T	.	67.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=15.43;MQ0=76	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227158	.	G	.	70.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=15.69;MQ0=73	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227159	.	C	.	70.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=15.69;MQ0=73	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227160	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=15.69;MQ0=73	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227161	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=15.69;MQ0=73	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227162	.	G	.	70.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=15.6;MQ0=74	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227163	.	T	.	79.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.07;MQ0=73	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227164	.	C	.	79.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.07;MQ0=73	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227165	.	G	.	79.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.17;MQ0=72	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227166	.	A	.	79.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.17;MQ0=72	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227167	.	A	.	79.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.17;MQ0=72	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227168	.	C	.	79.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.17;MQ0=72	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227169	.	G	.	79.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=17.26;MQ0=71	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227170	.	G	.	79.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=16.88;MQ0=75	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227171	.	T	.	79.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=16.88;MQ0=75	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227172	.	A	.	79.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=16.88;MQ0=75	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227173	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=17.69;MQ0=75	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227174	.	C	.	85.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=17.69;MQ0=75	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227175	.	A	.	88.23	mq_score:50;min_depth:100	AN=2;DP=92;MQ=18.1;MQ0=72	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227176	.	G	.	88.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=17.91;MQ0=74	GT:DP	0/0:94
gi|15829254|ref|NC_002695.1|	227177	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=17.07;MQ0=79	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227178	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=98;MQ=17.07;MQ0=79	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227179	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.52;MQ0=74	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227180	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.52;MQ0=74	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227181	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.52;MQ0=74	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227182	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.52;MQ0=74	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227183	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=93;MQ=17.52;MQ0=74	GT:DP	0/0:93
gi|15829254|ref|NC_002695.1|	227184	.	C	.	85.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=17.71;MQ0=72	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227185	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=91;MQ=17.71;MQ0=72	GT:DP	0/0:91
gi|15829254|ref|NC_002695.1|	227186	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.91;MQ0=70	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227187	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227188	.	C	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227189	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227190	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227191	.	C	.	82.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227192	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227193	.	T	.	82.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227194	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227195	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=90;MQ=17.81;MQ0=71	GT:DP	0/0:90
gi|15829254|ref|NC_002695.1|	227196	.	C	.	85.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.91;MQ0=70	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227197	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=18.12;MQ0=68	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227198	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=18.12;MQ0=68	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227199	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=18.12;MQ0=68	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227200	.	C	.	85.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=18.12;MQ0=68	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227201	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=18.01;MQ0=69	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227202	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=18.01;MQ0=69	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227203	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=18.01;MQ0=69	GT:DP	0/0:88
gi|15829254|ref|NC_002695.1|	227204	.	T	.	82.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=17.6;MQ0=69	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227205	.	G	.	82.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=17.6;MQ0=69	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227206	.	G	.	82.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=17.6;MQ0=69	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227207	.	C	.	82.23	mq_score:50;min_depth:100	AN=2;DP=88;MQ=17.5;MQ0=70	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227208	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.91;MQ0=70	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227209	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=89;MQ=17.91;MQ0=70	GT:DP	0/0:89
gi|15829254|ref|NC_002695.1|	227210	.	A	.	85.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=18.66;MQ0=63	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227211	.	C	.	85.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=18.66;MQ0=63	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227212	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=80;MQ=18.89;MQ0=61	GT:DP	0/0:80
gi|15829254|ref|NC_002695.1|	227213	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=79;MQ=19.01;MQ0=60	GT:DP	0/0:79
gi|15829254|ref|NC_002695.1|	227214	.	G	.	85.23	mq_score:50;min_depth:100	AN=2;DP=79;MQ=19.01;MQ0=60	GT:DP	0/0:79
gi|15829254|ref|NC_002695.1|	227215	.	T	.	85.23	mq_score:50;min_depth:100	AN=2;DP=74;MQ=19.64;MQ0=55	GT:DP	0/0:74
gi|15829254|ref|NC_002695.1|	227216	.	G	.	88.23	mq_score:50;min_depth:100	AN=2;DP=76;MQ=19.92;MQ0=56	GT:DP	0/0:76
gi|15829254|ref|NC_002695.1|	227217	.	A	.	88.23	mq_score:50;min_depth:100	AN=2;DP=76;MQ=19.92;MQ0=56	GT:DP	0/0:76
gi|15829254|ref|NC_002695.1|	227218	.	G	.	88.23	mq_score:50;min_depth:100	AN=2;DP=76;MQ=19.92;MQ0=56	GT:DP	0/0:76
gi|15829254|ref|NC_002695.1|	227219	.	T	.	88.23	mq_score:50;min_depth:100	AN=2;DP=76;MQ=19.92;MQ0=56	GT:DP	0/0:75
gi|15829254|ref|NC_002695.1|	227220	.	A	.	82.23	mq_score:50;min_depth:100	AN=2;DP=73;MQ=19.22;MQ0=55	GT:DP	0/0:73
gi|15829254|ref|NC_002695.1|	227221	.	A	.	82.23	mq_score:50;min_depth:100	AN=2;DP=73;MQ=19.22;MQ0=55	GT:DP	0/0:73
gi|15829254|ref|NC_002695.1|	227222	.	T	.	73.23	mq_score:50;min_depth:100	AN=2;DP=63;MQ=19.16;MQ0=48	GT:DP	0/0:63
gi|15829254|ref|NC_002695.1|	227223	.	G	.	73.23	mq_score:50;min_depth:100	AN=2;DP=65;MQ=18.86;MQ0=50	GT:DP	0/0:64
gi|15829254|ref|NC_002695.1|	227224	.	T	.	70.23	mq_score:50;min_depth:100	AN=2;DP=65;MQ=18.86;MQ0=50	GT:DP	0/0:65
gi|15829254|ref|NC_002695.1|	227225	.	C	.	67.23	mq_score:50;min_depth:100	AN=2;DP=61;MQ=18.07;MQ0=48	GT:DP	0/0:61
gi|15829254|ref|NC_002695.1|	227226	.	T	.	67.23	mq_score:50;min_depth:100	AN=2;DP=58;MQ=18.54;MQ0=45	GT:DP	0/0:58
gi|15829254|ref|NC_002695.1|	227227	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=57;MQ=18.7;MQ0=44	GT:DP	0/0:57
gi|15829254|ref|NC_002695.1|	227228	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=57;MQ=18.7;MQ0=44	GT:DP	0/0:57
gi|15829254|ref|NC_002695.1|	227229	.	G	.	64.23	mq_score:50;min_depth:100	AN=2;DP=57;MQ=18.7;MQ0=44	GT:DP	0/0:57
gi|15829254|ref|NC_002695.1|	227230	.	A	.	64.23	mq_score:50;min_depth:100	AN=2;DP=55;MQ=18.26;MQ0=43	GT:DP	0/0:55
gi|15829254|ref|NC_002695.1|	227231	.	A	.	58.23	mq_score:50;min_depth:100	AN=2;DP=53;MQ=17.77;MQ0=42	GT:DP	0/0:53
gi|15829254|ref|NC_002695.1|	227232	.	A	.	61.23	mq_score:50;min_depth:100	AN=2;DP=49;MQ=18.48;MQ0=38	GT:DP	0/0:49
gi|15829254|ref|NC_002695.1|	227233	.	C	.	61.23	mq_score:50;min_depth:100	AN=2;DP=49;MQ=18.48;MQ0=38	GT:DP	0/0:49
gi|15829254|ref|NC_002695.1|	227234	.	T	.	61.23	mq_score:50;min_depth:100	AN=2;DP=48;MQ=18.67;MQ0=37	GT:DP	0/0:48
gi|15829254|ref|NC_002695.1|	227235	.	G	.	61.23	mq_score:50;min_depth:100	AN=2;DP=50;MQ=18.29;MQ0=39	GT:DP	0/0:48
gi|15829254|ref|NC_002695.1|	227236	.	C	.	61.23	mq_score:50;min_depth:100	AN=2;DP=50;MQ=18.29;MQ0=39	GT:DP	0/0:50
gi|15829254|ref|NC_002695.1|	227237	.	C	.	64.23	mq_score:50;min_depth:100	AN=2;DP=51;MQ=18.96;MQ0=39	GT:DP	0/0:51
gi|15829254|ref|NC_002695.1|	227238	.	T	.	64.23	mq_score:50;min_depth:100	AN=2;DP=51;MQ=18.96;MQ0=39	GT:DP	0/0:51
gi|15829254|ref|NC_002695.1|	227239	.	G	.	64.23	mq_score:50;min_depth:100	AN=2;DP=52;MQ=18.77;MQ0=40	GT:DP	0/0:52
gi|15829254|ref|NC_002695.1|	227240	.	A	.	64.23	mq_score:50;min_depth:100	AN=2;DP=54;MQ=18.42;MQ0=42	GT:DP	0/0:54
gi|15829254|ref|NC_002695.1|	227241	.	T	.	61.23	mq_score:50;min_depth:100	AN=2;DP=54;MQ=18.42;MQ0=42	GT:DP	0/0:54
gi|15829254|ref|NC_002695.1|	227242	.	G	.	64.23	mq_score:50;min_depth:100	AN=2;DP=53;MQ=18.6;MQ0=41	GT:DP	0/0:53
gi|15829254|ref|NC_002695.1|	227243	.	G	.	64.23	mq_score:50;min_depth:100	AN=2;DP=52;MQ=18.77;MQ0=40	GT:DP	0/0:52
gi|15829254|ref|NC_002695.1|	227244	.	A	.	64.23	mq_score:50;min_depth:100	AN=2;DP=50;MQ=19.15;MQ0=38	GT:DP	0/0:50
gi|15829254|ref|NC_002695.1|	227245	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=51;MQ=19.77;MQ0=38	GT:DP	0/0:51
gi|15829254|ref|NC_002695.1|	227246	.	A	.	67.23	mq_score:50;min_depth:100	AN=2;DP=48;MQ=20.38;MQ0=35	GT:DP	0/0:48
gi|15829254|ref|NC_002695.1|	227247	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=56;MQ=18.86;MQ0=43	GT:DP	0/0:56
gi|15829254|ref|NC_002695.1|	227248	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=57;MQ=18.7;MQ0=44	GT:DP	0/0:57
gi|15829254|ref|NC_002695.1|	227249	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=58;MQ=18.54;MQ0=45	GT:DP	0/0:58
gi|15829254|ref|NC_002695.1|	227250	.	A	.	67.23	mq_score:50;min_depth:100	AN=2;DP=57;MQ=18.7;MQ0=44	GT:DP	0/0:57
gi|15829254|ref|NC_002695.1|	227251	.	T	.	70.23	mq_score:50;min_depth:100	AN=2;DP=62;MQ=18.63;MQ0=48	GT:DP	0/0:62
gi|15829254|ref|NC_002695.1|	227252	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=63;MQ=18.49;MQ0=49	GT:DP	0/0:63
gi|15829254|ref|NC_002695.1|	227253	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=63;MQ=18.49;MQ0=49	GT:DP	0/0:63
gi|15829254|ref|NC_002695.1|	227254	.	C	.	70.23	mq_score:50;min_depth:100	AN=2;DP=64;MQ=18.34;MQ0=50	GT:DP	0/0:64
gi|15829254|ref|NC_002695.1|	227255	.	T	.	67.23	mq_score:50;min_depth:100	AN=2;DP=60;MQ=18.22;MQ0=47	GT:DP	0/0:60
gi|15829254|ref|NC_002695.1|	227256	.	A	.	64.23	mq_score:50;min_depth:100	AN=2;DP=61;MQ=17.33;MQ0=49	GT:DP	0/0:61
gi|15829254|ref|NC_002695.1|	227257	.	C	.	64.23	mq_score:50;min_depth:100	AN=2;DP=66;MQ=16.66;MQ0=54	GT:DP	0/0:66
gi|15829254|ref|NC_002695.1|	227258	.	T	.	67.23	mq_score:50;min_depth:100	AN=2;DP=67;MQ=17.25;MQ0=54	GT:DP	0/0:67
gi|15829254|ref|NC_002695.1|	227259	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=68;MQ=17.12;MQ0=55	GT:DP	0/0:68
gi|15829254|ref|NC_002695.1|	227260	.	G	.	67.23	mq_score:50;min_depth:100	AN=2;DP=70;MQ=16.87;MQ0=57	GT:DP	0/0:70
gi|15829254|ref|NC_002695.1|	227261	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=73;MQ=17.17;MQ0=59	GT:DP	0/0:73
gi|15829254|ref|NC_002695.1|	227262	.	A	.	70.23	mq_score:50;min_depth:100	AN=2;DP=73;MQ=17.17;MQ0=59	GT:DP	0/0:73
gi|15829254|ref|NC_002695.1|	227263	.	A	.	61.23	mq_score:50;min_depth:100	AN=2;DP=67;MQ=15.8;MQ0=56	GT:DP	0/0:67
gi|15829254|ref|NC_002695.1|	227264	.	C	.	61.23	mq_score:50;min_depth:100	AN=2;DP=70;MQ=15.46;MQ0=59	GT:DP	0/0:70
gi|15829254|ref|NC_002695.1|	227265	.	G	.	61.23	mq_score:50;min_depth:100	AN=2;DP=69;MQ=15.57;MQ0=58	GT:DP	0/0:69
gi|15829254|ref|NC_002695.1|	227266	.	G	.	61.23	mq_score:50;min_depth:100	AN=2;DP=73;MQ=15.14;MQ0=62	GT:DP	0/0:73
gi|15829254|ref|NC_002695.1|	227267	.	T	.	61.23	mq_score:50;min_depth:100	AN=2;DP=73;MQ=15.14;MQ0=62	GT:DP	0/0:73
gi|15829254|ref|NC_002695.1|	227268	.	A	.	61.23	mq_score:50;min_depth:100	AN=2;DP=83;MQ=14.2;MQ0=72	GT:DP	0/0:83
gi|15829254|ref|NC_002695.1|	227269	.	G	.	61.23	mq_score:50;min_depth:100	AN=2;DP=83;MQ=14.2;MQ0=72	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227270	.	C	.	61.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=14.28;MQ0=71	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227271	.	T	.	61.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=14.28;MQ0=71	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227272	.	A	.	61.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=14.28;MQ0=71	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227273	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=81;MQ=12.92;MQ0=72	GT:DP	0/0:81
gi|15829254|ref|NC_002695.1|	227274	.	T	.	55.23	mq_score:50;min_depth:100	AN=2;DP=83;MQ=12.77;MQ0=74	GT:DP	0/0:83
gi|15829254|ref|NC_002695.1|	227275	.	A	.	49.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=12.49;MQ0=74	GT:DP	0/0:79
gi|15829254|ref|NC_002695.1|	227276	.	C	.	52.23	mq_score:50;min_depth:100	AN=2;DP=82;MQ=12.49;MQ0=74	GT:DP	0/0:82
gi|15829254|ref|NC_002695.1|	227277	.	C	.	52.23	mq_score:50;min_depth:100	AN=2;DP=77;MQ=12.89;MQ0=69	GT:DP	0/0:77
gi|15829254|ref|NC_002695.1|	227278	.	G	.	52.23	mq_score:50;min_depth:100	AN=2;DP=79;MQ=12.73;MQ0=71	GT:DP	0/0:79
gi|15829254|ref|NC_002695.1|	227279	.	C	.	55.23	mq_score:50;min_depth:100	AN=2;DP=80;MQ=13.42;MQ0=71	GT:DP	0/0:80
gi|15829254|ref|NC_002695.1|	227280	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=80;MQ=13.42;MQ0=71	GT:DP	0/0:80
gi|15829254|ref|NC_002695.1|	227281	.	T	.	55.23	mq_score:50;min_depth:100	AN=2;DP=80;MQ=13.42;MQ0=71	GT:DP	0/0:80
gi|15829254|ref|NC_002695.1|	227282	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227283	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227284	.	C	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227285	.	G	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227286	.	T	.	55.23	mq_score:50;min_depth:100	AN=2;DP=79;MQ=13.5;MQ0=70	GT:DP	0/0:79
gi|15829254|ref|NC_002695.1|	227287	.	C	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227288	.	G	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227289	.	C	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:77
gi|15829254|ref|NC_002695.1|	227290	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=78;MQ=13.59;MQ0=69	GT:DP	0/0:78
gi|15829254|ref|NC_002695.1|	227291	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=80;MQ=13.42;MQ0=71	GT:DP	0/0:80
gi|15829254|ref|NC_002695.1|	227292	.	G	.	55.23	mq_score:50;min_depth:100	AN=2;DP=87;MQ=12.87;MQ0=78	GT:DP	0/0:87
gi|15829254|ref|NC_002695.1|	227293	.	A	.	52.23	mq_score:50;min_depth:100	AN=2;DP=94;MQ=12.38;MQ0=85	GT:DP	0/0:92
gi|15829254|ref|NC_002695.1|	227294	.	C	.	55.23	mq_score:50;min_depth:100	AN=2;DP=95;MQ=12.31;MQ0=86	GT:DP	0/0:95
gi|15829254|ref|NC_002695.1|	227295	.	C	.	55.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=12.25;MQ0=87	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227296	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=96;MQ=12.25;MQ0=87	GT:DP	0/0:96
gi|15829254|ref|NC_002695.1|	227297	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=12.18;MQ0=88	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227298	.	A	.	55.23	mq_score:50;min_depth:100	AN=2;DP=97;MQ=12.18;MQ0=88	GT:DP	0/0:97
gi|15829254|ref|NC_002695.1|	227299	.	G	.	55.23	mq_score:50	AN=2;DP=101;MQ=11.94;MQ0=92	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227300	.	A	.	55.23	mq_score:50	AN=2;DP=101;MQ=11.94;MQ0=92	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227301	.	G	.	55.23	mq_score:50	AN=2;DP=100;MQ=12.0;MQ0=91	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227302	.	G	.	55.23	mq_score:50	AN=2;DP=103;MQ=11.82;MQ0=94	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227303	.	G	.	55.23	mq_score:50	AN=2;DP=103;MQ=11.82;MQ0=94	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227304	.	G	.	55.23	mq_score:50	AN=2;DP=103;MQ=11.82;MQ0=94	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227305	.	G	.	55.23	mq_score:50	AN=2;DP=103;MQ=11.82;MQ0=94	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227306	.	A	.	55.23	mq_score:50	AN=2;DP=103;MQ=11.82;MQ0=94	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227307	.	C	.	55.23	mq_score:50	AN=2;DP=107;MQ=11.6;MQ0=98	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227308	.	C	.	52.23	mq_score:50	AN=2;DP=106;MQ=10.99;MQ0=98	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227309	.	T	.	52.23	mq_score:50	AN=2;DP=109;MQ=10.84;MQ0=101	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227310	.	T	.	52.23	mq_score:50	AN=2;DP=110;MQ=10.79;MQ0=102	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227311	.	C	.	52.23	mq_score:50	AN=2;DP=110;MQ=10.79;MQ0=102	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227312	.	G	.	52.23	mq_score:50	AN=2;DP=110;MQ=10.79;MQ0=102	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227313	.	G	.	52.23	mq_score:50	AN=2;DP=110;MQ=10.79;MQ0=102	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227314	.	G	.	52.23	mq_score:50	AN=2;DP=110;MQ=10.79;MQ0=102	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227315	.	C	.	52.23	mq_score:50	AN=2;DP=110;MQ=10.79;MQ0=102	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227316	.	C	.	49.23	mq_score:50	AN=2;DP=108;MQ=10.18;MQ0=101	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227317	.	T	.	49.23	mq_score:50	AN=2;DP=106;MQ=10.28;MQ0=99	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227318	.	C	.	49.23	mq_score:50	AN=2;DP=107;MQ=10.23;MQ0=100	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227319	.	T	.	49.23	mq_score:50	AN=2;DP=107;MQ=10.23;MQ0=100	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227320	.	T	.	49.23	mq_score:50	AN=2;DP=108;MQ=10.18;MQ0=101	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227321	.	G	.	49.23	mq_score:50	AN=2;DP=108;MQ=10.18;MQ0=101	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227322	.	C	.	49.23	mq_score:50	AN=2;DP=107;MQ=10.23;MQ0=100	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227323	.	C	.	49.23	mq_score:50	AN=2;DP=106;MQ=10.28;MQ0=99	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227324	.	A	.	49.23	mq_score:50	AN=2;DP=109;MQ=10.14;MQ0=102	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227325	.	T	.	49.23	mq_score:50	AN=2;DP=109;MQ=10.14;MQ0=102	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227326	.	C	.	49.23	mq_score:50	AN=2;DP=109;MQ=10.14;MQ0=102	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227327	.	G	.	49.23	mq_score:50	AN=2;DP=109;MQ=10.14;MQ0=102	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227328	.	G	.	49.23	mq_score:50	AN=2;DP=111;MQ=10.04;MQ0=104	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	227329	.	A	.	49.23	mq_score:50	AN=2;DP=112;MQ=10.0;MQ0=105	GT:DP	0/0:112
gi|15829254|ref|NC_002695.1|	227330	.	T	.	49.23	mq_score:50	AN=2;DP=113;MQ=9.96;MQ0=106	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227331	.	G	.	49.23	mq_score:50	AN=2;DP=115;MQ=9.87;MQ0=108	GT:DP	0/0:115
gi|15829254|ref|NC_002695.1|	227332	.	T	.	49.23	mq_score:50	AN=2;DP=115;MQ=9.87;MQ0=108	GT:DP	0/0:115
gi|15829254|ref|NC_002695.1|	227333	.	G	.	49.23	mq_score:50	AN=2;DP=117;MQ=9.78;MQ0=110	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227334	.	C	.	49.23	mq_score:50	AN=2;DP=117;MQ=9.78;MQ0=110	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227335	.	C	.	49.23	mq_score:50	AN=2;DP=116;MQ=9.83;MQ0=109	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227336	.	C	.	49.23	mq_score:50	AN=2;DP=116;MQ=9.83;MQ0=109	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227337	.	A	.	46.23	mq_score:50	AN=2;DP=116;MQ=9.1;MQ0=110	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227338	.	G	.	46.23	mq_score:50	AN=2;DP=117;MQ=9.06;MQ0=111	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227339	.	A	.	46.23	mq_score:50	AN=2;DP=116;MQ=9.1;MQ0=110	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227340	.	T	.	46.23	mq_score:50	AN=2;DP=115;MQ=9.14;MQ0=109	GT:DP	0/0:115
gi|15829254|ref|NC_002695.1|	227341	.	G	.	46.23	mq_score:50	AN=2;DP=116;MQ=9.1;MQ0=110	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227342	.	G	.	49.23	mq_score:50	AN=2;DP=129;MQ=9.32;MQ0=122	GT:DP	0/0:129
gi|15829254|ref|NC_002695.1|	227343	.	G	.	49.23	mq_score:50	AN=2;DP=129;MQ=9.32;MQ0=122	GT:DP	0/0:129
gi|15829254|ref|NC_002695.1|	227344	.	A	.	49.23	mq_score:50	AN=2;DP=129;MQ=9.32;MQ0=122	GT:DP	0/0:129
gi|15829254|ref|NC_002695.1|	227345	.	T	.	46.23	mq_score:50	AN=2;DP=128;MQ=8.66;MQ0=122	GT:DP	0/0:128
gi|15829254|ref|NC_002695.1|	227346	.	T	.	43.23	mq_score:50	AN=2;DP=128;MQ=8.66;MQ0=122	GT:DP	0/0:127
gi|15829254|ref|NC_002695.1|	227347	.	A	.	46.23	mq_score:50	AN=2;DP=128;MQ=8.66;MQ0=122	GT:DP	0/0:128
gi|15829254|ref|NC_002695.1|	227348	.	G	.	46.23	mq_score:50	AN=2;DP=127;MQ=8.69;MQ0=121	GT:DP	0/0:127
gi|15829254|ref|NC_002695.1|	227349	.	C	.	46.23	mq_score:50	AN=2;DP=128;MQ=8.66;MQ0=122	GT:DP	0/0:128
gi|15829254|ref|NC_002695.1|	227350	.	T	.	46.23	mq_score:50	AN=2;DP=128;MQ=8.66;MQ0=122	GT:DP	0/0:128
gi|15829254|ref|NC_002695.1|	227351	.	A	.	43.23	mq_score:50	AN=2;DP=125;MQ=8.0;MQ0=120	GT:DP	0/0:125
gi|15829254|ref|NC_002695.1|	227352	.	G	.	43.23	mq_score:50	AN=2;DP=124;MQ=8.03;MQ0=119	GT:DP	0/0:124
gi|15829254|ref|NC_002695.1|	227353	.	T	.	43.23	mq_score:50	AN=2;DP=125;MQ=8.0;MQ0=120	GT:DP	0/0:124
gi|15829254|ref|NC_002695.1|	227354	.	A	.	43.23	mq_score:50	AN=2;DP=125;MQ=8.0;MQ0=120	GT:DP	0/0:125
gi|15829254|ref|NC_002695.1|	227355	.	G	.	43.23	mq_score:50	AN=2;DP=125;MQ=8.0;MQ0=120	GT:DP	0/0:125
gi|15829254|ref|NC_002695.1|	227356	.	G	.	43.23	mq_score:50	AN=2;DP=123;MQ=8.06;MQ0=118	GT:DP	0/0:123
gi|15829254|ref|NC_002695.1|	227357	.	T	.	46.23	mq_score:50	AN=2;DP=119;MQ=8.98;MQ0=113	GT:DP	0/0:119
gi|15829254|ref|NC_002695.1|	227358	.	G	.	43.23	mq_score:50	AN=2;DP=117;MQ=8.27;MQ0=112	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227359	.	G	.	43.23	mq_score:50	AN=2;DP=121;MQ=8.13;MQ0=116	GT:DP	0/0:121
gi|15829254|ref|NC_002695.1|	227360	.	G	.	43.23	mq_score:50	AN=2;DP=119;MQ=8.2;MQ0=114	GT:DP	0/0:119
gi|15829254|ref|NC_002695.1|	227361	.	G	.	40.23	mq_score:50	AN=2;DP=116;MQ=7.43;MQ0=112	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227362	.	T	.	40.23	mq_score:50	AN=2;DP=116;MQ=7.43;MQ0=112	GT:DP	0/0:115
gi|15829254|ref|NC_002695.1|	227363	.	A	.	40.23	mq_score:50	AN=2;DP=115;MQ=7.46;MQ0=111	GT:DP	0/0:115
gi|15829254|ref|NC_002695.1|	227364	.	A	.	40.23	mq_score:50	AN=2;DP=113;MQ=7.53;MQ0=109	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227365	.	C	.	40.23	mq_score:50	AN=2;DP=114;MQ=7.49;MQ0=110	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227366	.	G	.	40.23	mq_score:50	AN=2;DP=110;MQ=7.63;MQ0=106	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227367	.	G	.	40.23	mq_score:50	AN=2;DP=111;MQ=7.59;MQ0=107	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	227368	.	C	.	40.23	mq_score:50	AN=2;DP=105;MQ=7.81;MQ0=101	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227369	.	T	.	40.23	mq_score:50	AN=2;DP=104;MQ=7.84;MQ0=100	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227370	.	C	.	40.23	mq_score:50	AN=2;DP=106;MQ=7.77;MQ0=102	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227371	.	A	.	40.23	mq_score:50	AN=2;DP=106;MQ=7.77;MQ0=102	GT:DP	0/0:106
gi|15829254|ref|NC_002695.1|	227372	.	C	.	40.23	mq_score:50	AN=2;DP=110;MQ=7.63;MQ0=106	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227373	.	C	.	40.23	mq_score:50	AN=2;DP=109;MQ=7.66;MQ0=105	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227374	.	T	.	40.23	mq_score:50	AN=2;DP=111;MQ=7.59;MQ0=107	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	227375	.	A	.	40.23	mq_score:50	AN=2;DP=111;MQ=7.59;MQ0=107	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	227376	.	G	.	40.23	mq_score:50	AN=2;DP=110;MQ=7.63;MQ0=106	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227377	.	G	.	40.23	mq_score:50	AN=2;DP=110;MQ=7.63;MQ0=106	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227378	.	C	.	40.23	mq_score:50	AN=2;DP=109;MQ=7.66;MQ0=105	GT:DP	0/0:109
gi|15829254|ref|NC_002695.1|	227379	.	G	.	37.23	mq_score:50	AN=2;DP=108;MQ=6.67;MQ0=105	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227380	.	A	.	37.23	mq_score:50	AN=2;DP=108;MQ=6.67;MQ0=105	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227381	.	C	.	37.23	mq_score:50	AN=2;DP=108;MQ=6.67;MQ0=105	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227382	.	G	.	37.23	mq_score:50	AN=2;DP=108;MQ=6.67;MQ0=105	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227383	.	A	.	37.23	mq_score:50	AN=2;DP=119;MQ=6.35;MQ0=116	GT:DP	0/0:119
gi|15829254|ref|NC_002695.1|	227384	.	T	.	37.23	mq_score:50	AN=2;DP=124;MQ=6.22;MQ0=121	GT:DP	0/0:124
gi|15829254|ref|NC_002695.1|	227385	.	C	.	37.23	mq_score:50	AN=2;DP=124;MQ=6.22;MQ0=121	GT:DP	0/0:124
gi|15829254|ref|NC_002695.1|	227386	.	C	.	37.23	mq_score:50	AN=2;DP=123;MQ=6.25;MQ0=120	GT:DP	0/0:123
gi|15829254|ref|NC_002695.1|	227387	.	C	.	37.23	mq_score:50	AN=2;DP=125;MQ=6.2;MQ0=122	GT:DP	0/0:125
gi|15829254|ref|NC_002695.1|	227388	.	T	.	37.23	mq_score:50	AN=2;DP=128;MQ=6.12;MQ0=125	GT:DP	0/0:128
gi|15829254|ref|NC_002695.1|	227389	.	A	.	37.23	mq_score:50	AN=2;DP=128;MQ=6.12;MQ0=125	GT:DP	0/0:128
gi|15829254|ref|NC_002695.1|	227390	.	G	.	37.23	mq_score:50	AN=2;DP=126;MQ=6.17;MQ0=123	GT:DP	0/0:126
gi|15829254|ref|NC_002695.1|	227391	.	C	.	37.23	mq_score:50	AN=2;DP=126;MQ=6.17;MQ0=123	GT:DP	0/0:126
gi|15829254|ref|NC_002695.1|	227392	.	T	.	37.23	mq_score:50	AN=2;DP=119;MQ=6.35;MQ0=116	GT:DP	0/0:119
gi|15829254|ref|NC_002695.1|	227393	.	G	.	37.23	mq_score:50	AN=2;DP=114;MQ=6.49;MQ0=111	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227394	.	G	.	37.23	mq_score:50	AN=2;DP=114;MQ=6.49;MQ0=111	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227395	.	T	.	37.23	mq_score:50	AN=2;DP=114;MQ=6.49;MQ0=111	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227396	.	C	.	37.23	mq_score:50	AN=2;DP=114;MQ=6.49;MQ0=111	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227397	.	T	.	37.23	mq_score:50	AN=2;DP=113;MQ=6.52;MQ0=110	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227398	.	G	.	37.23	mq_score:50	AN=2;DP=114;MQ=6.49;MQ0=111	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227399	.	A	.	37.23	mq_score:50	AN=2;DP=111;MQ=6.58;MQ0=108	GT:DP	0/0:111
gi|15829254|ref|NC_002695.1|	227400	.	G	.	37.23	mq_score:50	AN=2;DP=112;MQ=6.55;MQ0=109	GT:DP	0/0:112
gi|15829254|ref|NC_002695.1|	227401	.	A	.	37.23	mq_score:50	AN=2;DP=112;MQ=6.55;MQ0=109	GT:DP	0/0:112
gi|15829254|ref|NC_002695.1|	227402	.	G	.	34.23	mq_score:50	AN=2;DP=108;MQ=5.44;MQ0=106	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227403	.	G	.	34.23	mq_score:50	AN=2;DP=108;MQ=5.44;MQ0=106	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227404	.	A	.	34.23	mq_score:50	AN=2;DP=108;MQ=5.44;MQ0=106	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227405	.	T	.	34.23	mq_score:50	AN=2;DP=108;MQ=5.44;MQ0=106	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227406	.	G	.	34.23	mq_score:50	AN=2;DP=108;MQ=5.44;MQ0=106	GT:DP	0/0:108
gi|15829254|ref|NC_002695.1|	227407	.	A	.	34.23	mq_score:50	AN=2;DP=104;MQ=5.55;MQ0=102	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227408	.	C	.	34.23	mq_score:50	AN=2;DP=104;MQ=5.55;MQ0=102	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227409	.	C	.	34.23	mq_score:50	AN=2;DP=101;MQ=5.63;MQ0=99	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227410	.	A	.	34.23	mq_score:50	AN=2;DP=100;MQ=5.66;MQ0=98	GT:DP	0/0:100
gi|15829254|ref|NC_002695.1|	227411	.	G	.	34.23	mq_score:50	AN=2;DP=101;MQ=5.63;MQ0=99	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227412	.	C	.	34.23	mq_score:50	AN=2;DP=101;MQ=5.63;MQ0=99	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227413	.	C	.	34.23	mq_score:50	AN=2;DP=101;MQ=5.63;MQ0=99	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227414	.	A	.	34.23	mq_score:50;min_depth:100	AN=2;DP=101;MQ=5.63;MQ0=99	GT:DP	0/0:98
gi|15829254|ref|NC_002695.1|	227415	.	C	.	34.23	mq_score:50	AN=2;DP=112;MQ=5.35;MQ0=110	GT:DP	0/0:112
gi|15829254|ref|NC_002695.1|	227416	.	A	.	34.23	mq_score:50	AN=2;DP=116;MQ=5.25;MQ0=114	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227417	.	C	.	34.23	mq_score:50	AN=2;DP=118;MQ=5.21;MQ0=116	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	227418	.	T	.	34.23	mq_score:50	AN=2;DP=117;MQ=5.23;MQ0=115	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227419	.	G	.	34.23	mq_score:50	AN=2;DP=118;MQ=5.21;MQ0=116	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	227420	.	G	.	34.23	mq_score:50	AN=2;DP=118;MQ=5.21;MQ0=116	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	227421	.	A	.	34.23	mq_score:50	AN=2;DP=119;MQ=5.19;MQ0=117	GT:DP	0/0:119
gi|15829254|ref|NC_002695.1|	227422	.	A	.	34.23	mq_score:50	AN=2;DP=119;MQ=5.19;MQ0=117	GT:DP	0/0:119
gi|15829254|ref|NC_002695.1|	227423	.	C	.	34.23	mq_score:50	AN=2;DP=121;MQ=5.14;MQ0=119	GT:DP	0/0:121
gi|15829254|ref|NC_002695.1|	227424	.	T	.	34.23	mq_score:50	AN=2;DP=118;MQ=5.21;MQ0=116	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	227425	.	G	.	34.23	mq_score:50	AN=2;DP=117;MQ=5.23;MQ0=115	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227426	.	A	.	34.23	mq_score:50	AN=2;DP=117;MQ=5.23;MQ0=115	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227427	.	G	.	34.23	mq_score:50	AN=2;DP=118;MQ=5.21;MQ0=116	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	227428	.	A	.	34.23	mq_score:50	AN=2;DP=118;MQ=5.21;MQ0=116	GT:DP	0/0:118
gi|15829254|ref|NC_002695.1|	227429	.	C	.	34.23	mq_score:50	AN=2;DP=117;MQ=5.23;MQ0=115	GT:DP	0/0:117
gi|15829254|ref|NC_002695.1|	227430	.	A	.	34.23	mq_score:50	AN=2;DP=116;MQ=5.25;MQ0=114	GT:DP	0/0:116
gi|15829254|ref|NC_002695.1|	227431	.	C	.	34.23	mq_score:50	AN=2;DP=114;MQ=5.3;MQ0=112	GT:DP	0/0:114
gi|15829254|ref|NC_002695.1|	227432	.	G	.	34.23	mq_score:50	AN=2;DP=113;MQ=5.32;MQ0=111	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227433	.	G	.	34.23	mq_score:50	AN=2;DP=120;MQ=5.16;MQ0=118	GT:DP	0/0:120
gi|15829254|ref|NC_002695.1|	227434	.	T	.	34.23	mq_score:50	AN=2;DP=121;MQ=5.14;MQ0=119	GT:DP	0/0:121
gi|15829254|ref|NC_002695.1|	227435	.	C	.	34.23	mq_score:50	AN=2;DP=121;MQ=5.14;MQ0=119	GT:DP	0/0:121
gi|15829254|ref|NC_002695.1|	227436	.	C	.	34.23	mq_score:50	AN=2;DP=122;MQ=5.12;MQ0=120	GT:DP	0/0:122
gi|15829254|ref|NC_002695.1|	227437	.	A	.	34.23	mq_score:50	AN=2;DP=121;MQ=5.14;MQ0=119	GT:DP	0/0:121
gi|15829254|ref|NC_002695.1|	227438	.	G	.	34.23	mq_score:50	AN=2;DP=122;MQ=5.12;MQ0=120	GT:DP	0/0:122
gi|15829254|ref|NC_002695.1|	227439	.	A	.	34.23	mq_score:50	AN=2;DP=123;MQ=5.1;MQ0=121	GT:DP	0/0:121
gi|15829254|ref|NC_002695.1|	227440	.	C	.	34.23	mq_score:50	AN=2;DP=126;MQ=5.04;MQ0=124	GT:DP	0/0:126
gi|15829254|ref|NC_002695.1|	227441	.	T	.	34.23	mq_score:50	AN=2;DP=124;MQ=5.08;MQ0=122	GT:DP	0/0:124
gi|15829254|ref|NC_002695.1|	227442	.	C	.	31.24	mq_score:50	AN=2;DP=113;MQ=3.76;MQ0=112	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227443	.	C	.	31.24	mq_score:50	AN=2;DP=113;MQ=3.76;MQ0=112	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227444	.	T	.	31.23	mq_score:50	AN=2;DP=113;MQ=3.76;MQ0=112	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227445	.	A	.	31.23	mq_score:50	AN=2;DP=113;MQ=3.76;MQ0=112	GT:DP	0/0:110
gi|15829254|ref|NC_002695.1|	227446	.	C	.	31.23	mq_score:50	AN=2;DP=113;MQ=3.76;MQ0=112	GT:DP	0/0:113
gi|15829254|ref|NC_002695.1|	227447	.	G	.	31.23	mq_score:50	AN=2;DP=104;MQ=3.92;MQ0=103	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227448	.	G	.	31.23	mq_score:50	AN=2;DP=107;MQ=3.87;MQ0=106	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227449	.	G	.	31.23	mq_score:50	AN=2;DP=105;MQ=3.9;MQ0=104	GT:DP	0/0:105
gi|15829254|ref|NC_002695.1|	227450	.	A	.	31.23	mq_score:50	AN=2;DP=107;MQ=3.87;MQ0=106	GT:DP	0/0:107
gi|15829254|ref|NC_002695.1|	227451	.	G	.	31.23	mq_score:50	AN=2;DP=103;MQ=3.94;MQ0=102	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227452	.	G	.	31.23	mq_score:50	AN=2;DP=102;MQ=3.96;MQ0=101	GT:DP	0/0:101
gi|15829254|ref|NC_002695.1|	227453	.	C	.	31.23	mq_score:50	AN=2;DP=103;MQ=3.94;MQ0=102	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227454	.	A	.	31.23	mq_score:50	AN=2;DP=102;MQ=3.96;MQ0=101	GT:DP	0/0:102
gi|15829254|ref|NC_002695.1|	227455	.	G	.	31.23	mq_score:50	AN=2;DP=104;MQ=3.92;MQ0=103	GT:DP	0/0:104
gi|15829254|ref|NC_002695.1|	227456	.	C	.	31.23	mq_score:50	AN=2;DP=103;MQ=3.94;MQ0=102	GT:DP	0/0:103
gi|15829254|ref|NC_002695.1|	227457	.	A	.	.	mq_score:50	DP=102;MQ=0.0;MQ0=102	GT	./.
gi|15829254|ref|NC_002695.1|	227458	.	G	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227459	.	T	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227460	.	G	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227461	.	G	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227462	.	G	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227463	.	G	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227464	.	A	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227465	.	A	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227466	.	T	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227467	.	A	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227468	.	T	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227469	.	T	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227470	.	G	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227471	.	C	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227472	.	A	.	.	mq_score:50	DP=122;MQ=0.0;MQ0=122	GT	./.
gi|15829254|ref|NC_002695.1|	227473	.	C	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227474	.	A	.	.	mq_score:50	DP=119;MQ=0.0;MQ0=119	GT	./.
gi|15829254|ref|NC_002695.1|	227475	.	A	.	.	mq_score:50	DP=119;MQ=0.0;MQ0=119	GT	./.
gi|15829254|ref|NC_002695.1|	227476	.	T	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227477	.	G	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227478	.	G	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227479	.	G	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227480	.	C	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227481	.	G	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227482	.	C	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227483	.	A	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227484	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227485	.	G	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227486	.	C	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227487	.	C	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227488	.	T	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227489	.	G	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227490	.	A	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227491	.	T	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227492	.	G	.	.	mq_score:50	DP=122;MQ=0.0;MQ0=122	GT	./.
gi|15829254|ref|NC_002695.1|	227493	.	C	.	.	mq_score:50	DP=122;MQ=0.0;MQ0=122	GT	./.
gi|15829254|ref|NC_002695.1|	227494	.	A	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227495	.	G	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227496	.	C	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227497	.	C	.	.	mq_score:50	DP=125;MQ=0.0;MQ0=125	GT	./.
gi|15829254|ref|NC_002695.1|	227498	.	A	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227499	.	T	.	.	mq_score:50	DP=127;MQ=0.0;MQ0=127	GT	./.
gi|15829254|ref|NC_002695.1|	227500	.	G	.	.	mq_score:50	DP=126;MQ=0.0;MQ0=126	GT	./.
gi|15829254|ref|NC_002695.1|	227501	.	C	.	.	mq_score:50	DP=126;MQ=0.0;MQ0=126	GT	./.
gi|15829254|ref|NC_002695.1|	227502	.	C	.	.	mq_score:50	DP=126;MQ=0.0;MQ0=126	GT	./.
gi|15829254|ref|NC_002695.1|	227503	.	G	.	.	mq_score:50	DP=126;MQ=0.0;MQ0=126	GT	./.
gi|15829254|ref|NC_002695.1|	227504	.	C	.	.	mq_score:50	DP=125;MQ=0.0;MQ0=125	GT	./.
gi|15829254|ref|NC_002695.1|	227505	.	G	.	.	mq_score:50	DP=126;MQ=0.0;MQ0=126	GT	./.
gi|15829254|ref|NC_002695.1|	227506	.	T	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227507	.	G	.	.	mq_score:50	DP=132;MQ=0.0;MQ0=132	GT	./.
gi|15829254|ref|NC_002695.1|	227508	.	T	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227509	.	A	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227510	.	T	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227511	.	G	.	.	mq_score:50	DP=128;MQ=0.0;MQ0=128	GT	./.
gi|15829254|ref|NC_002695.1|	227512	.	A	.	.	mq_score:50	DP=128;MQ=0.0;MQ0=128	GT	./.
gi|15829254|ref|NC_002695.1|	227513	.	A	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227514	.	G	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227515	.	A	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227516	.	A	.	.	mq_score:50	DP=125;MQ=0.0;MQ0=125	GT	./.
gi|15829254|ref|NC_002695.1|	227517	.	G	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227518	.	G	.	.	mq_score:50	DP=125;MQ=0.0;MQ0=125	GT	./.
gi|15829254|ref|NC_002695.1|	227519	.	C	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227520	.	C	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227521	.	T	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227522	.	T	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227523	.	C	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227524	.	G	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227525	.	G	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227526	.	G	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227527	.	T	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227528	.	T	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227529	.	G	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227530	.	T	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227531	.	A	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227532	.	A	.	.	mq_score:50	DP=122;MQ=0.0;MQ0=122	GT	./.
gi|15829254|ref|NC_002695.1|	227533	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227534	.	G	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227535	.	T	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227536	.	A	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227537	.	C	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227538	.	T	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227539	.	T	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227540	.	T	.	.	mq_score:50	DP=128;MQ=0.0;MQ0=128	GT	./.
gi|15829254|ref|NC_002695.1|	227541	.	C	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227542	.	A	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227543	.	G	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227544	.	C	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227545	.	G	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227546	.	G	.	.	mq_score:50	DP=133;MQ=0.0;MQ0=133	GT	./.
gi|15829254|ref|NC_002695.1|	227547	.	G	.	.	mq_score:50	DP=133;MQ=0.0;MQ0=133	GT	./.
gi|15829254|ref|NC_002695.1|	227548	.	G	.	.	mq_score:50	DP=133;MQ=0.0;MQ0=133	GT	./.
gi|15829254|ref|NC_002695.1|	227549	.	A	.	.	mq_score:50	DP=133;MQ=0.0;MQ0=133	GT	./.
gi|15829254|ref|NC_002695.1|	227550	.	G	.	.	mq_score:50	DP=133;MQ=0.0;MQ0=133	GT	./.
gi|15829254|ref|NC_002695.1|	227551	.	G	.	.	mq_score:50	DP=133;MQ=0.0;MQ0=133	GT	./.
gi|15829254|ref|NC_002695.1|	227552	.	A	.	.	mq_score:50	DP=134;MQ=0.0;MQ0=134	GT	./.
gi|15829254|ref|NC_002695.1|	227553	.	A	.	.	mq_score:50	DP=135;MQ=0.0;MQ0=135	GT	./.
gi|15829254|ref|NC_002695.1|	227554	.	G	.	.	mq_score:50	DP=137;MQ=0.0;MQ0=137	GT	./.
gi|15829254|ref|NC_002695.1|	227555	.	G	.	.	mq_score:50	DP=137;MQ=0.0;MQ0=137	GT	./.
gi|15829254|ref|NC_002695.1|	227556	.	G	.	.	mq_score:50	DP=139;MQ=0.0;MQ0=139	GT	./.
gi|15829254|ref|NC_002695.1|	227557	.	A	.	.	mq_score:50	DP=137;MQ=0.0;MQ0=137	GT	./.
gi|15829254|ref|NC_002695.1|	227558	.	G	.	.	mq_score:50	DP=136;MQ=0.0;MQ0=136	GT	./.
gi|15829254|ref|NC_002695.1|	227559	.	T	.	.	mq_score:50	DP=136;MQ=0.0;MQ0=136	GT	./.
gi|15829254|ref|NC_002695.1|	227560	.	A	.	.	mq_score:50	DP=134;MQ=0.0;MQ0=134	GT	./.
gi|15829254|ref|NC_002695.1|	227561	.	A	.	.	mq_score:50	DP=134;MQ=0.0;MQ0=134	GT	./.
gi|15829254|ref|NC_002695.1|	227562	.	A	.	.	mq_score:50	DP=135;MQ=0.0;MQ0=135	GT	./.
gi|15829254|ref|NC_002695.1|	227563	.	G	.	.	mq_score:50	DP=143;MQ=0.0;MQ0=143	GT	./.
gi|15829254|ref|NC_002695.1|	227564	.	T	.	.	mq_score:50	DP=137;MQ=0.0;MQ0=137	GT	./.
gi|15829254|ref|NC_002695.1|	227565	.	T	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227566	.	A	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227567	.	A	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227568	.	T	.	.	mq_score:50	DP=130;MQ=0.0;MQ0=130	GT	./.
gi|15829254|ref|NC_002695.1|	227569	.	A	.	.	mq_score:50	DP=128;MQ=0.0;MQ0=128	GT	./.
gi|15829254|ref|NC_002695.1|	227570	.	C	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227571	.	C	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227572	.	T	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227573	.	T	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227574	.	T	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227575	.	G	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227576	.	C	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227577	.	T	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227578	.	C	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227579	.	A	.	.	mq_score:50	DP=121;MQ=0.0;MQ0=121	GT	./.
gi|15829254|ref|NC_002695.1|	227580	.	T	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227581	.	T	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227582	.	G	.	.	mq_score:50	DP=124;MQ=0.0;MQ0=124	GT	./.
gi|15829254|ref|NC_002695.1|	227583	.	A	.	.	mq_score:50	DP=123;MQ=0.0;MQ0=123	GT	./.
gi|15829254|ref|NC_002695.1|	227584	.	C	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227585	.	G	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227586	.	T	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227587	.	T	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227588	.	A	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227589	.	C	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227590	.	C	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227591	.	C	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227592	.	G	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227593	.	C	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227594	.	A	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227595	.	G	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227596	.	A	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227597	.	A	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227598	.	G	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227599	.	A	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227600	.	A	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227601	.	G	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227602	.	C	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227603	.	A	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227604	.	C	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227605	.	C	.	.	mq_score:50	DP=102;MQ=0.0;MQ0=102	GT	./.
gi|15829254|ref|NC_002695.1|	227606	.	G	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227607	.	G	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227608	.	C	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227609	.	T	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227610	.	A	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227611	.	A	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227612	.	C	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227613	.	T	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227614	.	C	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227615	.	C	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227616	.	G	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227617	.	T	.	.	mq_score:50;min_depth:100	DP=98;MQ=0.0;MQ0=98	GT	./.
gi|15829254|ref|NC_002695.1|	227618	.	G	.	.	mq_score:50;min_depth:100	DP=97;MQ=0.0;MQ0=97	GT	./.
gi|15829254|ref|NC_002695.1|	227619	.	C	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227620	.	C	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227621	.	A	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227622	.	G	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227623	.	C	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227624	.	A	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227625	.	G	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227626	.	C	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227627	.	C	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227628	.	G	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227629	.	C	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227630	.	G	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227631	.	G	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227632	.	T	.	.	mq_score:50	DP=107;MQ=0.0;MQ0=107	GT	./.
gi|15829254|ref|NC_002695.1|	227633	.	A	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227634	.	A	.	.	mq_score:50	DP=114;MQ=0.0;MQ0=114	GT	./.
gi|15829254|ref|NC_002695.1|	227635	.	T	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227636	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227637	.	C	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227638	.	G	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227639	.	G	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227640	.	A	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227641	.	G	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227642	.	G	.	.	mq_score:50;min_depth:100	DP=97;MQ=0.0;MQ0=97	GT	./.
gi|15829254|ref|NC_002695.1|	227643	.	G	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227644	.	T	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227645	.	G	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227646	.	C	.	.	mq_score:50;min_depth:100	DP=98;MQ=0.0;MQ0=98	GT	./.
gi|15829254|ref|NC_002695.1|	227647	.	A	.	.	mq_score:50;min_depth:100	DP=98;MQ=0.0;MQ0=98	GT	./.
gi|15829254|ref|NC_002695.1|	227648	.	A	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227649	.	G	.	.	mq_score:50;min_depth:100	DP=97;MQ=0.0;MQ0=97	GT	./.
gi|15829254|ref|NC_002695.1|	227650	.	C	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227651	.	G	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227652	.	T	.	.	mq_score:50;min_depth:100	DP=93;MQ=0.0;MQ0=93	GT	./.
gi|15829254|ref|NC_002695.1|	227653	.	T	.	.	mq_score:50;min_depth:100	DP=93;MQ=0.0;MQ0=93	GT	./.
gi|15829254|ref|NC_002695.1|	227654	.	A	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227655	.	A	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227656	.	T	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227657	.	C	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227658	.	G	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227659	.	G	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227660	.	A	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227661	.	A	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227662	.	T	.	.	mq_score:50;min_depth:100	DP=93;MQ=0.0;MQ0=93	GT	./.
gi|15829254|ref|NC_002695.1|	227663	.	T	.	.	mq_score:50;min_depth:100	DP=86;MQ=0.0;MQ0=86	GT	./.
gi|15829254|ref|NC_002695.1|	227664	.	A	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227665	.	C	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227666	.	T	.	.	mq_score:50;min_depth:100	DP=90;MQ=0.0;MQ0=90	GT	./.
gi|15829254|ref|NC_002695.1|	227667	.	G	.	.	mq_score:50;min_depth:100	DP=90;MQ=0.0;MQ0=90	GT	./.
gi|15829254|ref|NC_002695.1|	227668	.	G	.	.	mq_score:50;min_depth:100	DP=93;MQ=0.0;MQ0=93	GT	./.
gi|15829254|ref|NC_002695.1|	227669	.	G	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227670	.	C	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227671	.	G	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227672	.	T	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227673	.	A	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227674	.	A	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227675	.	A	.	.	mq_score:50;min_depth:100	DP=97;MQ=0.0;MQ0=97	GT	./.
gi|15829254|ref|NC_002695.1|	227676	.	G	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227677	.	C	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227678	.	G	.	.	mq_score:50	DP=102;MQ=0.0;MQ0=102	GT	./.
gi|15829254|ref|NC_002695.1|	227679	.	C	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227680	.	A	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227681	.	C	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227682	.	G	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227683	.	C	.	.	mq_score:50	DP=107;MQ=0.0;MQ0=107	GT	./.
gi|15829254|ref|NC_002695.1|	227684	.	A	.	.	mq_score:50	DP=107;MQ=0.0;MQ0=107	GT	./.
gi|15829254|ref|NC_002695.1|	227685	.	G	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227686	.	G	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227687	.	C	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227688	.	G	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227689	.	G	.	.	mq_score:50	DP=113;MQ=0.0;MQ0=113	GT	./.
gi|15829254|ref|NC_002695.1|	227690	.	T	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227691	.	T	.	.	mq_score:50	DP=113;MQ=0.0;MQ0=113	GT	./.
gi|15829254|ref|NC_002695.1|	227692	.	T	.	.	mq_score:50	DP=113;MQ=0.0;MQ0=113	GT	./.
gi|15829254|ref|NC_002695.1|	227693	.	G	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227694	.	T	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227695	.	T	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227696	.	A	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227697	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227698	.	G	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227699	.	T	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227700	.	C	.	.	mq_score:50	DP=118;MQ=0.0;MQ0=118	GT	./.
gi|15829254|ref|NC_002695.1|	227701	.	A	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227702	.	G	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227703	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227704	.	T	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227705	.	G	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227706	.	T	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227707	.	G	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227708	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227709	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227710	.	A	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227711	.	T	.	.	mq_score:50	DP=114;MQ=0.0;MQ0=114	GT	./.
gi|15829254|ref|NC_002695.1|	227712	.	C	.	.	mq_score:50	DP=116;MQ=0.0;MQ0=116	GT	./.
gi|15829254|ref|NC_002695.1|	227713	.	C	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227714	.	C	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227715	.	C	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227716	.	G	.	.	mq_score:50	DP=119;MQ=0.0;MQ0=119	GT	./.
gi|15829254|ref|NC_002695.1|	227717	.	G	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227718	.	G	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227719	.	C	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227720	.	T	.	.	mq_score:50	DP=120;MQ=0.0;MQ0=120	GT	./.
gi|15829254|ref|NC_002695.1|	227721	.	C	.	.	mq_score:50	DP=127;MQ=0.0;MQ0=127	GT	./.
gi|15829254|ref|NC_002695.1|	227722	.	A	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227723	.	A	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227724	.	C	.	.	mq_score:50	DP=132;MQ=0.0;MQ0=132	GT	./.
gi|15829254|ref|NC_002695.1|	227725	.	C	.	.	mq_score:50	DP=131;MQ=0.0;MQ0=131	GT	./.
gi|15829254|ref|NC_002695.1|	227726	.	T	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227727	.	G	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227728	.	G	.	.	mq_score:50	DP=129;MQ=0.0;MQ0=129	GT	./.
gi|15829254|ref|NC_002695.1|	227729	.	G	.	.	mq_score:50	DP=122;MQ=0.0;MQ0=122	GT	./.
gi|15829254|ref|NC_002695.1|	227730	.	A	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227731	.	A	.	.	mq_score:50	DP=115;MQ=0.0;MQ0=115	GT	./.
gi|15829254|ref|NC_002695.1|	227732	.	C	.	.	mq_score:50	DP=117;MQ=0.0;MQ0=117	GT	./.
gi|15829254|ref|NC_002695.1|	227733	.	T	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227734	.	G	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227735	.	C	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227736	.	A	.	.	mq_score:50	DP=114;MQ=0.0;MQ0=114	GT	./.
gi|15829254|ref|NC_002695.1|	227737	.	T	.	.	mq_score:50	DP=114;MQ=0.0;MQ0=114	GT	./.
gi|15829254|ref|NC_002695.1|	227738	.	C	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227739	.	T	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227740	.	G	.	.	mq_score:50	DP=113;MQ=0.0;MQ0=113	GT	./.
gi|15829254|ref|NC_002695.1|	227741	.	A	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227742	.	T	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227743	.	A	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227744	.	C	.	.	mq_score:50	DP=107;MQ=0.0;MQ0=107	GT	./.
gi|15829254|ref|NC_002695.1|	227745	.	T	.	.	mq_score:50	DP=107;MQ=0.0;MQ0=107	GT	./.
gi|15829254|ref|NC_002695.1|	227746	.	G	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227747	.	G	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227748	.	C	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227749	.	A	.	.	mq_score:50	DP=108;MQ=0.0;MQ0=108	GT	./.
gi|15829254|ref|NC_002695.1|	227750	.	A	.	.	mq_score:50	DP=107;MQ=0.0;MQ0=107	GT	./.
gi|15829254|ref|NC_002695.1|	227751	.	G	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227752	.	C	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227753	.	T	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227754	.	T	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227755	.	G	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227756	.	A	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227757	.	G	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227758	.	T	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227759	.	C	.	.	mq_score:50	DP=112;MQ=0.0;MQ0=112	GT	./.
gi|15829254|ref|NC_002695.1|	227760	.	T	.	.	mq_score:50	DP=113;MQ=0.0;MQ0=113	GT	./.
gi|15829254|ref|NC_002695.1|	227761	.	C	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227762	.	G	.	.	mq_score:50	DP=110;MQ=0.0;MQ0=110	GT	./.
gi|15829254|ref|NC_002695.1|	227763	.	T	.	.	mq_score:50	DP=111;MQ=0.0;MQ0=111	GT	./.
gi|15829254|ref|NC_002695.1|	227764	.	A	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227765	.	G	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227766	.	A	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227767	.	G	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227768	.	G	.	.	mq_score:50	DP=102;MQ=0.0;MQ0=102	GT	./.
gi|15829254|ref|NC_002695.1|	227769	.	G	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227770	.	G	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227771	.	G	.	.	mq_score:50	DP=100;MQ=0.0;MQ0=100	GT	./.
gi|15829254|ref|NC_002695.1|	227772	.	G	.	.	mq_score:50	DP=100;MQ=0.0;MQ0=100	GT	./.
gi|15829254|ref|NC_002695.1|	227773	.	T	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227774	.	A	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227775	.	G	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227776	.	A	.	.	mq_score:50	DP=100;MQ=0.0;MQ0=100	GT	./.
gi|15829254|ref|NC_002695.1|	227777	.	A	.	.	mq_score:50	DP=101;MQ=0.0;MQ0=101	GT	./.
gi|15829254|ref|NC_002695.1|	227778	.	T	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227779	.	T	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227780	.	C	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227781	.	C	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227782	.	A	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227783	.	G	.	.	mq_score:50;min_depth:100	DP=91;MQ=0.0;MQ0=91	GT	./.
gi|15829254|ref|NC_002695.1|	227784	.	G	.	.	mq_score:50;min_depth:100	DP=91;MQ=0.0;MQ0=91	GT	./.
gi|15829254|ref|NC_002695.1|	227785	.	T	.	.	mq_score:50;min_depth:100	DP=91;MQ=0.0;MQ0=91	GT	./.
gi|15829254|ref|NC_002695.1|	227786	.	G	.	.	mq_score:50;min_depth:100	DP=90;MQ=0.0;MQ0=90	GT	./.
gi|15829254|ref|NC_002695.1|	227787	.	T	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227788	.	A	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227789	.	G	.	.	mq_score:50;min_depth:100	DP=88;MQ=0.0;MQ0=88	GT	./.
gi|15829254|ref|NC_002695.1|	227790	.	C	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227791	.	G	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227792	.	G	.	.	mq_score:50;min_depth:100	DP=87;MQ=0.0;MQ0=87	GT	./.
gi|15829254|ref|NC_002695.1|	227793	.	T	.	.	mq_score:50;min_depth:100	DP=84;MQ=0.0;MQ0=84	GT	./.
gi|15829254|ref|NC_002695.1|	227794	.	G	.	.	mq_score:50;min_depth:100	DP=84;MQ=0.0;MQ0=84	GT	./.
gi|15829254|ref|NC_002695.1|	227795	.	A	.	.	mq_score:50;min_depth:100	DP=89;MQ=0.0;MQ0=89	GT	./.
gi|15829254|ref|NC_002695.1|	227796	.	A	.	.	mq_score:50;min_depth:100	DP=89;MQ=0.0;MQ0=89	GT	./.
gi|15829254|ref|NC_002695.1|	227797	.	A	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227798	.	T	.	.	mq_score:50;min_depth:100	DP=89;MQ=0.0;MQ0=89	GT	./.
gi|15829254|ref|NC_002695.1|	227799	.	G	.	.	mq_score:50;min_depth:100	DP=93;MQ=0.0;MQ0=93	GT	./.
gi|15829254|ref|NC_002695.1|	227800	.	C	.	.	mq_score:50;min_depth:100	DP=93;MQ=0.0;MQ0=93	GT	./.
gi|15829254|ref|NC_002695.1|	227801	.	G	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227802	.	T	.	.	mq_score:50;min_depth:100	DP=91;MQ=0.0;MQ0=91	GT	./.
gi|15829254|ref|NC_002695.1|	227803	.	A	.	.	mq_score:50;min_depth:100	DP=92;MQ=0.0;MQ0=92	GT	./.
gi|15829254|ref|NC_002695.1|	227804	.	G	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227805	.	A	.	.	mq_score:50;min_depth:100	DP=96;MQ=0.0;MQ0=96	GT	./.
gi|15829254|ref|NC_002695.1|	227806	.	G	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227807	.	A	.	.	mq_score:50	DP=109;MQ=0.0;MQ0=109	GT	./.
gi|15829254|ref|NC_002695.1|	227808	.	T	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227809	.	C	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227810	.	T	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227811	.	G	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227812	.	G	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227813	.	A	.	.	mq_score:50	DP=105;MQ=0.0;MQ0=105	GT	./.
gi|15829254|ref|NC_002695.1|	227814	.	G	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227815	.	G	.	.	mq_score:50	DP=106;MQ=0.0;MQ0=106	GT	./.
gi|15829254|ref|NC_002695.1|	227816	.	A	.	.	mq_score:50	DP=102;MQ=0.0;MQ0=102	GT	./.
gi|15829254|ref|NC_002695.1|	227817	.	A	.	.	mq_score:50	DP=102;MQ=0.0;MQ0=102	GT	./.
gi|15829254|ref|NC_002695.1|	227818	.	T	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227819	.	A	.	.	mq_score:50	DP=103;MQ=0.0;MQ0=103	GT	./.
gi|15829254|ref|NC_002695.1|	227820	.	C	.	.	mq_score:50	DP=104;MQ=0.0;MQ0=104	GT	./.
gi|15829254|ref|NC_002695.1|	227821	.	C	.	.	mq_score:50;min_depth:100	DP=97;MQ=0.0;MQ0=97	GT	./.
gi|15829254|ref|NC_002695.1|	227822	.	G	.	.	mq_score:50;min_depth:100	DP=99;MQ=0.0;MQ0=99	GT	./.
gi|15829254|ref|NC_002695.1|	227823	.	G	.	.	mq_score:50;min_depth:100	DP=97;MQ=0.0;MQ0=97	GT	./.
gi|15829254|ref|NC_002695.1|	227824	.	T	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227825	.	G	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227826	.	G	.	.	mq_score:50;min_depth:100	DP=95;MQ=0.0;MQ0=95	GT	./.
gi|15829254|ref|NC_002695.1|	227827	.	C	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.
gi|15829254|ref|NC_002695.1|	227828	.	G	.	.	mq_score:50;min_depth:100	DP=94;MQ=0.0;MQ0=94	GT	./.