Mercurial > repos > ulfschaefer > phephenix

changeset 1:162c88041ed7 draft

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Uploaded
author ulfschaefer
date Tue, 10 May 2016 05:16:08 -0400
parents cb29f95c7b88
children 79fc19ba1cbc
files Galaxy-Workflow-Phenix_workflow.ga
diffstat 1 files changed, 219 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Galaxy-Workflow-Phenix_workflow.ga	Tue May 10 05:16:08 2016 -0400
@@ -0,0 +1,219 @@
+{
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+    "annotation": "", 
+    "format-version": "0.1", 
+    "name": "Phenix workflow", 
+    "steps": {
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+            "annotation": "", 
+            "content_id": null, 
+            "id": 0, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "Reference fasta"
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+            "label": null, 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
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+                "top": 116
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+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"Reference fasta\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "uuid": "576fa42b-080a-4cc4-aff3-2f2eac3fe3b7", 
+            "workflow_outputs": []
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+            "id": 1, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "R1 fastq"
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+            ], 
+            "label": null, 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
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+                "top": 334
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+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"R1 fastq\"}", 
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+            "type": "data_input", 
+            "uuid": "10a74ae8-b3f1-4409-8502-f6f79a55b071", 
+            "workflow_outputs": []
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+            "id": 2, 
+            "input_connections": {}, 
+            "inputs": [
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+            "name": "Input dataset", 
+            "outputs": [], 
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+                "top": 462
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+            "tool_state": "{\"name\": \"R2 fastqs\"}", 
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+                    "output_name": "output"
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+            "inputs": [], 
+            "label": null, 
+            "name": "Map with BWA-MEM", 
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+                    "type": "bam"
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+            "inputs": [], 
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+                    "type": "vcf"
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+}
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