# HG changeset patch
# User ulfschaefer
# Date 1450268607 18000
# Node ID bff397ce7794d9da72782a8eb667a252f740fe2e
# Parent  01bd7d27089d79eaca9513f5585f6cc7f05cc9d2
Deleted selected files

diff -r 01bd7d27089d -r bff397ce7794 vcfs2fasta/vcfs2fasta.sh
--- a/vcfs2fasta/vcfs2fasta.sh	Wed Dec 16 07:23:12 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,51 +0,0 @@
-#!/bin/bash
-
-echo $@
-
-OUTPUT=$1
-shift
-WITHMIXTURES=$1
-shift
-COLUMNNS=$1
-shift
-SAMPLENS=$1
-shift
-REFERENCE=$1
-shift
-INCLUDE=$1
-shift
-EXCLUDE=$1
-shift
-INPUT=$@
-
-DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
-export PATH=$PATH:$DIR
-
-CMD="vcfs2fasta.py --out $OUTPUT --input $INPUT"
-
-if [ $WITHMIXTURES != "NOTTHERE" ]; then
-    CMD="$CMD --with-mixtures $WITHMIXTURES"
-fi
-
-if [ $COLUMNNS != "NOTTHERE" ]; then
-    CMD="$CMD --column-Ns $COLUMNNS"
-fi
-
-if [ $SAMPLENS != "NOTTHERE" ]; then
-    CMD="$CMD --sample-Ns $SAMPLENS"
-fi
-
-if [ $REFERENCE != "NOTTHERE" ]; then
-    CMD="$CMD --reference $REFERENCE"
-fi
-
-if [ $INCLUDE != "NOTTHERE" ]; then
-    CMD="$CMD --include INCLUDE"
-fi
-
-if [ $EXCLUDE != "NOTTHERE" ]; then
-    CMD="$CMD --exclude EXCLUDE"
-fi
-
-echo $CMD
-eval $CMD