Mercurial > repos > urgi-team > gandalfworkflow

diff tool_dependencies.xml @ 7:a6b557df86db draft

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author urgi-team
date Tue, 15 Dec 2015 05:35:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Dec 15 05:35:36 2015 -0500
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="VCF_Gandalf_Tools" version="1.0">
+		<install version="1.0">
+			<actions>
+				<action type="download_by_url">https://urgi.versailles.inra.fr/download/gandalf/VCFtools-1.2.tar.gz</action>
+				<action type="shell_command">python setup_VCFtools.py install</action>
+				<action type="move_directory_files">
+					<source_directory>.</source_directory>
+					<destination_directory>$INSTALL_DIR</destination_directory>
+				</action>
+				<action type="set_environment">
+					<environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+				</action>
+			</actions>
+		</install>
+	</package>
+</tool_dependency>