annotate TEisotools-1.1.a/commons/core/coord/SplitOnLength.py @ 15:255c852351c5 draft

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# Copyright INRA (Institut National de la Recherche Agronomique)
# http://www.inra.fr
# http://urgi.versailles.inra.fr
#
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# modify and/ or redistribute the software under the terms of the CeCILL
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# "http://www.cecill.info".
#
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from commons.core.LoggerFactory import LoggerFactory

LOG_DEPTH = "repet.commons.core.coord"

## Splits a list of objects implementing getLength() based on a list of length thresholds
#
class SplitOnLength(object):

    def __init__(self, lObjects, lThresholds, verbosity = 0):
        self._log = LoggerFactory.createLogger("%s.%s" % (LOG_DEPTH, self.__class__.__name__), verbosity = verbosity)
        self._lObjects = lObjects
        self._lThresholds = lThresholds
    
    ## Splits the list of objects over the list of thresholds.
    #
    # @return a list of lists (groups) of objects
    #
    def split(self):
        lSplit = [self._lObjects]
        doObjectsImplementGetLength = False not in set([hasattr(o, "getLength") for o in self._lObjects])

        if not self._lObjects:
            self._log.warning("Empty input objects list, no split.")
        elif not doObjectsImplementGetLength:
            self._log.warning("At least one object in the list does not implement getLength(), no split.")
        elif not self._lThresholds:
            self._log.warning("Empty input thresholds list, no split.")
        elif not self._lThresholds == sorted(self._lThresholds):
            self._log.warning("Input thresholds list isn't sorted, no split. (%s)" % self._lThresholds)
        else:
            lSplit = [[] for i in xrange(len(self._lThresholds) + 1)]

            for obj in self._lObjects:
                if obj.getLength() <= self._lThresholds[0]:
                    lSplit[0].append(obj)
                elif self._lThresholds[-1] < obj.getLength():
                    lSplit[-1].append(obj)
                else:
                    for i in range(0, len(self._lThresholds) - 1):
                        if self._lThresholds[i] < obj.getLength() <= self._lThresholds[i + 1]:
                            lSplit[i + 1].append(obj)
                            break
        return lSplit