diff TEisotools-1.1.a/commons/core/coord/SplitOnLength.py @ 16:836ce3d9d47a draft default tip

Uploaded

--- a/TEisotools-1.1.a/commons/core/coord/SplitOnLength.py	Thu Jul 21 07:36:44 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,73 +0,0 @@
-# Copyright INRA (Institut National de la Recherche Agronomique)
-# http://www.inra.fr
-# http://urgi.versailles.inra.fr
-#
-# This software is governed by the CeCILL license under French law and
-# abiding by the rules of distribution of free software.  You can  use,
-# modify and/ or redistribute the software under the terms of the CeCILL
-# license as circulated by CEA, CNRS and INRIA at the following URL
-# "http://www.cecill.info".
-#
-# As a counterpart to the access to the source code and  rights to copy,
-# modify and redistribute granted by the license, users are provided only
-# with a limited warranty  and the software's author,  the holder of the
-# economic rights,  and the successive licensors  have only  limited
-# liability.
-#
-# In this respect, the user's attention is drawn to the risks associated
-# with loading,  using,  modifying and/or developing or reproducing the
-# software by the user in light of its specific status of free software,
-# that may mean  that it is complicated to manipulate,  and  that  also
-# therefore means  that it is reserved for developers  and  experienced
-# professionals having in-depth computer knowledge. Users are therefore
-# encouraged to load and test the software's suitability as regards their
-# requirements in conditions enabling the security of their systems and/or
-# data to be ensured and,  more generally, to use and operate it in the
-# same conditions as regards security.
-#
-# The fact that you are presently reading this means that you have had
-# knowledge of the CeCILL license and that you accept its terms.
-
-from commons.core.LoggerFactory import LoggerFactory
-
-LOG_DEPTH = "repet.commons.core.coord"
-
-## Splits a list of objects implementing getLength() based on a list of length thresholds
-#
-class SplitOnLength(object):
-
-    def __init__(self, lObjects, lThresholds, verbosity = 0):
-        self._log = LoggerFactory.createLogger("%s.%s" % (LOG_DEPTH, self.__class__.__name__), verbosity = verbosity)
-        self._lObjects = lObjects
-        self._lThresholds = lThresholds
-    
-    ## Splits the list of objects over the list of thresholds.
-    #
-    # @return a list of lists (groups) of objects
-    #
-    def split(self):
-        lSplit = [self._lObjects]
-        doObjectsImplementGetLength = False not in set([hasattr(o, "getLength") for o in self._lObjects])
-
-        if not self._lObjects:
-            self._log.warning("Empty input objects list, no split.")
-        elif not doObjectsImplementGetLength:
-            self._log.warning("At least one object in the list does not implement getLength(), no split.")
-        elif not self._lThresholds:
-            self._log.warning("Empty input thresholds list, no split.")
-        elif not self._lThresholds == sorted(self._lThresholds):
-            self._log.warning("Input thresholds list isn't sorted, no split. (%s)" % self._lThresholds)
-        else:
-            lSplit = [[] for i in xrange(len(self._lThresholds) + 1)]
-
-            for obj in self._lObjects:
-                if obj.getLength() <= self._lThresholds[0]:
-                    lSplit[0].append(obj)
-                elif self._lThresholds[-1] < obj.getLength():
-                    lSplit[-1].append(obj)
-                else:
-                    for i in range(0, len(self._lThresholds) - 1):
-                        if self._lThresholds[i] < obj.getLength() <= self._lThresholds[i + 1]:
-                            lSplit[i + 1].append(obj)
-                            break
-        return lSplit