Mercurial > repos > urgi-team > vcfgandalftools
comparison VCFGandalfTools/VCFCarto_wrapper.py @ 3:1fd1f727c330 draft default tip
Uploaded
| author | urgi-team |
|---|---|
| date | Fri, 08 Apr 2016 12:07:35 -0400 |
| parents | 6bebeb76fa8d |
| children |
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| 2:6bebeb76fa8d | 3:1fd1f727c330 |
|---|---|
| 45 args = "" | 45 args = "" |
| 46 args += "-f %s" % self._options.tableName | 46 args += "-f %s" % self._options.tableName |
| 47 args += " " | 47 args += " " |
| 48 args += "-o %s" % self._options.outFile | 48 args += "-o %s" % self._options.outFile |
| 49 args += " " | 49 args += " " |
| 50 args += "-A %s" % self._options.refA | |
| 51 args += " " | |
| 52 args += "-H %s" % self._options.refH | |
| 53 args += " " | |
| 54 args += "-v 2 " | 50 args += "-v 2 " |
| 55 if self._options.onlyPar : | 51 if self._options.onlyPar : |
| 56 args += " " | 52 args += " " |
| 57 args += "-p" | 53 args += "-p" |
| 58 if self._options.mergeMarkers : | 54 if self._options.mergeMarkers : |
| 59 args += " " | 55 args += " " |
| 60 args += "-m" | 56 args += "-m" |
| 61 if self._options.graphs : | 57 if self._options.graphs : |
| 62 args += " " | 58 args += " " |
| 63 args += "-g" | 59 args += "-g" |
| 60 else : | |
| 61 args += " " | |
| 62 args += "-A %s" % self._options.refA | |
| 63 args += " " | |
| 64 args += "-H %s" % self._options.refH | |
| 64 cmd = "%s %s" %(prg, args) | 65 cmd = "%s %s" %(prg, args) |
| 65 | 66 |
| 66 print cmd | 67 print cmd |
| 67 | 68 |
| 68 try: | 69 try: |