Mercurial > repos > urgi-team > vcfgandalftools

diff VCFGandalfTools/VCFCarto_wrapper.py @ 3:1fd1f727c330 draft default tip

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Uploaded
author urgi-team
date Fri, 08 Apr 2016 12:07:35 -0400
parents 6bebeb76fa8d
children
line wrap: on
line diff
--- a/VCFGandalfTools/VCFCarto_wrapper.py	Tue Apr 05 08:33:41 2016 -0400
+++ b/VCFGandalfTools/VCFCarto_wrapper.py	Fri Apr 08 12:07:35 2016 -0400
@@ -47,10 +47,6 @@
         args += " "
         args += "-o %s" % self._options.outFile
         args += " "
-        args += "-A %s" % self._options.refA
-        args += " "
-        args += "-H %s" % self._options.refH
-        args += " "
         args += "-v 2 "
         if self._options.onlyPar :
             args += " "
@@ -61,6 +57,11 @@
             if self._options.graphs :
                 args += " "
                 args += "-g"
+        else : 
+            args += " "
+            args += "-A %s" % self._options.refA
+            args += " "
+            args += "-H %s" % self._options.refH
         cmd = "%s %s" %(prg, args)
         
         print cmd