annotate TEiso/Galaxy-Workflow-TEiso_workflow.ga @ 2:bfd4dc7f50c5 draft

Uploaded
author urgi-team
date Wed, 25 May 2016 10:28:25 -0400
parents a4d1ca76edb8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
1 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
2 "a_galaxy_workflow": "true",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
3 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
4 "format-version": "0.1",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
5 "name": "TEiso_workflow",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
6 "steps": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
7 "0": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
8 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
9 "id": 0,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
10 "input_connections": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
11 "inputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
12 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
13 "description": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
14 "name": "Input Dataset"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
15 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
16 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
17 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
18 "name": "Input dataset",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
19 "outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
20 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
21 "left": 200,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
22 "top": 200
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
23 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
24 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
25 "tool_id": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
26 "tool_state": "{\"name\": \"Input Dataset\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
27 "tool_version": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
28 "type": "data_input",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
29 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
30 "uuid": "a910dd6c-d6e5-4d3a-b3cd-3624c8c509b6"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
31 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
32 "1": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
33 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
34 "id": 1,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
35 "input_connections": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
36 "inputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
37 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
38 "description": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
39 "name": "Input Dataset"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
40 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
41 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
42 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
43 "name": "Input dataset",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
44 "outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
45 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
46 "left": 200,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
47 "top": 285
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
48 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
49 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
50 "tool_id": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
51 "tool_state": "{\"name\": \"Input Dataset\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
52 "tool_version": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
53 "type": "data_input",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
54 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
55 "uuid": "98cee5d8-d791-4f91-8f29-ccc98003e392"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
56 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
57 "2": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
58 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
59 "id": 2,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
60 "input_connections": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
61 "inputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
62 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
63 "description": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
64 "name": "Input Dataset"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
65 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
66 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
67 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
68 "name": "Input dataset",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
69 "outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
70 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
71 "left": 200,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
72 "top": 370
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
73 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
74 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
75 "tool_id": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
76 "tool_state": "{\"name\": \"Input Dataset\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
77 "tool_version": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
78 "type": "data_input",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
79 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
80 "uuid": "1fc62c7e-fbb8-48b4-89da-18c629838b7c"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
81 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
82 "3": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
83 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
84 "id": 3,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
85 "input_connections": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
86 "inputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
87 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
88 "description": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
89 "name": "Input Dataset"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
90 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
91 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
92 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
93 "name": "Input dataset",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
94 "outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
95 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
96 "left": 200,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
97 "top": 455
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
98 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
99 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
100 "tool_id": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
101 "tool_state": "{\"name\": \"Input Dataset\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
102 "tool_version": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
103 "type": "data_input",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
104 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
105 "uuid": "49264998-41ff-4776-81f2-06e3fbaac133"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
106 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
107 "4": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
108 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
109 "id": 4,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
110 "input_connections": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
111 "inputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
112 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
113 "description": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
114 "name": "Input Dataset"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
115 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
116 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
117 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
118 "name": "Input dataset",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
119 "outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
120 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
121 "left": 200,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
122 "top": 540
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
123 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
124 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
125 "tool_id": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
126 "tool_state": "{\"name\": \"Input Dataset\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
127 "tool_version": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
128 "type": "data_input",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
129 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
130 "uuid": "869588d6-af39-40d2-afaa-86a3c9935aa9"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
131 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
132 "5": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
133 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
134 "id": 5,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
135 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
136 "refGenomeSource|ownFile": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
137 "id": 3,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
138 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
139 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
140 "singlePaired|input1": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
141 "id": 0,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
142 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
143 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
144 "singlePaired|input2": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
145 "id": 1,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
146 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
147 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
148 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
149 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
150 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
151 "name": "TopHat",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
152 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
153 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
154 "name": "align_summary",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
155 "type": "txt"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
156 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
157 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
158 "name": "fusions",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
159 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
160 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
161 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
162 "name": "insertions",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
163 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
164 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
165 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
166 "name": "deletions",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
167 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
168 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
169 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
170 "name": "junctions",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
171 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
172 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
173 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
174 "name": "accepted_hits",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
175 "type": "bam"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
176 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
177 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
178 "name": "unmapped",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
179 "type": "bam"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
180 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
181 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
182 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
183 "left": 428,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
184 "top": 200
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
185 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
186 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
187 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
188 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/0.9",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
189 "tool_state": "{\"__page__\": 0, \"singlePaired\": \"{\\\"input2\\\": null, \\\"input1\\\": null, \\\"report_discordant_pairs\\\": \\\"Yes\\\", \\\"sPaired\\\": \\\"paired\\\", \\\"__current_case__\\\": 1, \\\"mate_inner_distance\\\": \\\"300\\\", \\\"mate_std_dev\\\": \\\"20\\\"}\", \"chromInfo\": \"\\\"/home/repet_cloud/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null, \"readGroup\": \"{\\\"__current_case__\\\": 1, \\\"specReadGroup\\\": \\\"no\\\"}\", \"params\": \"{\\\"settingsType\\\": \\\"preSet\\\", \\\"__current_case__\\\": 0}\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
190 "tool_version": "0.9",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
191 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
192 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
193 "uuid": "3b5324aa-7209-4de0-9135-a267ae3d6266"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
194 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
195 "6": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
196 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
197 "id": 6,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
198 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
199 "inputFile": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
200 "id": 4,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
201 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
202 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
203 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
204 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
205 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
206 "name": "GFFToBed",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
207 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
208 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
209 "name": "outputFile",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
210 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
211 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
212 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
213 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
214 "left": 1071,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
215 "top": 535
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
216 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
217 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
218 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
219 "tool_id": "toolshed.g2.bx.psu.edu/repos/urgi-team/teiso/GFFToBed/1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
220 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/home/repet_cloud/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"inputFile\": \"null\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
221 "tool_version": "1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
222 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
223 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
224 "uuid": "ac60365f-0928-44d8-9829-5a616ab7ab23"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
225 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
226 "7": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
227 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
228 "id": 7,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
229 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
230 "input": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
231 "id": 5,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
232 "output_name": "accepted_hits"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
233 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
234 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
235 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
236 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
237 "name": "Cufflinks",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
238 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
239 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
240 "name": "genes_expression",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
241 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
242 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
243 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
244 "name": "transcripts_expression",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
245 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
246 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
247 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
248 "name": "assembled_isoforms",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
249 "type": "gtf"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
250 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
251 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
252 "name": "total_map_mass",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
253 "type": "txt"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
254 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
255 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
256 "name": "skipped",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
257 "type": "gtf"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
258 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
259 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
260 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
261 "left": 740,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
262 "top": 200
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
263 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
264 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
265 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
266 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
267 "tool_state": "{\"reference_annotation\": \"{\\\"use_ref\\\": \\\"No\\\", \\\"__current_case__\\\": 0}\", \"min_isoform_fraction\": \"\\\"0.1\\\"\", \"multiread_correct\": \"\\\"No\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"pre_mrna_fraction\": \"\\\"0.15\\\"\", \"bias_correction\": \"{\\\"do_bias_correction\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"max_intron_len\": \"\\\"300000\\\"\", \"input\": \"null\", \"global_model\": \"null\", \"chromInfo\": \"\\\"/home/repet_cloud/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"length_correction\": \"\\\"\\\"\", \"advanced_settings\": \"{\\\"__current_case__\\\": 0, \\\"use_advanced_settings\\\": \\\"No\\\"}\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
268 "tool_version": "2.2.1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
269 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
270 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
271 "uuid": "3a0017dc-8664-49a9-8963-5323cf575ef3"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
272 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
273 "8": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
274 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
275 "id": 8,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
276 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
277 "inputFile": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
278 "id": 7,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
279 "output_name": "assembled_isoforms"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
280 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
281 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
282 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
283 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
284 "name": "CufflinksGTFToBed",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
285 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
286 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
287 "name": "outputFile",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
288 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
289 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
290 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
291 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
292 "left": 1068,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
293 "top": 200
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
294 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
295 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
296 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
297 "tool_id": "toolshed.g2.bx.psu.edu/repos/urgi-team/teiso/CufflinksGTFToBed/1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
298 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/home/repet_cloud/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"inputFile\": \"null\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
299 "tool_version": "1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
300 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
301 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
302 "uuid": "97f9cf7e-4f21-4827-81d2-03bd7b66010a"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
303 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
304 "9": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
305 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
306 "id": 9,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
307 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
308 "annotation|reference_annotation": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
309 "id": 2,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
310 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
311 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
312 "inputs": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
313 "id": 7,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
314 "output_name": "skipped"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
315 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
316 "seq_data|seq_source|ref_file": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
317 "id": 3,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
318 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
319 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
320 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
321 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
322 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
323 "name": "Cuffcompare",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
324 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
325 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
326 "name": "transcripts_accuracy",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
327 "type": "txt"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
328 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
329 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
330 "name": "input1_tmap",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
331 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
332 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
333 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
334 "name": "input1_refmap",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
335 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
336 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
337 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
338 "name": "input2_tmap",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
339 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
340 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
341 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
342 "name": "input2_refmap",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
343 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
344 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
345 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
346 "name": "transcripts_tracking",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
347 "type": "tabular"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
348 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
349 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
350 "name": "transcripts_combined",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
351 "type": "gtf"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
352 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
353 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
354 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
355 "left": 1076,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
356 "top": 716
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
357 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
358 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
359 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
360 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
361 "tool_state": "{\"seq_data\": \"{\\\"use_seq_data\\\": \\\"Yes\\\", \\\"seq_source\\\": {\\\"index_source\\\": \\\"history\\\", \\\"ref_file\\\": null, \\\"__current_case__\\\": 1}, \\\"__current_case__\\\": 1}\", \"inputs\": \"null\", \"max_dist_group\": \"\\\"100\\\"\", \"__page__\": 0, \"discard_intron_redundant_transfrags\": \"\\\"False\\\"\", \"max_dist_exon\": \"\\\"100\\\"\", \"__rerun_remap_job_id__\": null, \"additional_inputs\": \"[]\", \"discard_single_exon\": \"\\\"\\\"\", \"chromInfo\": \"\\\"/home/repet_cloud/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"annotation\": \"{\\\"reference_annotation\\\": null, \\\"use_ref_annotation\\\": \\\"Yes\\\", \\\"ignore_nonoverlapping_reference\\\": \\\"False\\\", \\\"__current_case__\\\": 0, \\\"ignore_nonoverlapping_transfrags\\\": \\\"False\\\"}\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
362 "tool_version": "2.2.1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
363 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
364 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
365 "uuid": "4e1afb8e-9c8b-431f-b25f-75e19e3e95f2"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
366 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
367 "10": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
368 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
369 "id": 10,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
370 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
371 "inputA": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
372 "id": 8,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
373 "output_name": "outputFile"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
374 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
375 "inputB": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
376 "id": 6,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
377 "output_name": "outputFile"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
378 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
379 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
380 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
381 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
382 "name": "ClosestBed",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
383 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
384 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
385 "name": "output",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
386 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
387 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
388 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
389 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
390 "left": 1436,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
391 "top": 303
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
392 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
393 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
394 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
395 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.24.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
396 "tool_state": "{\"__page__\": 0, \"addition\": \"\\\"True\\\"\", \"k\": \"\\\"1\\\"\", \"inputB\": \"null\", \"mdb\": \"\\\"each\\\"\", \"inputA\": \"null\", \"io\": \"\\\"False\\\"\", \"ties\": \"\\\"all\\\"\", \"addition2\": \"{\\\"fu\\\": \\\"False\\\", \\\"iu\\\": \\\"False\\\", \\\"fd\\\": \\\"False\\\", \\\"__current_case__\\\": 2, \\\"addition2_select\\\": \\\"a\\\", \\\"id\\\": \\\"False\\\"}\", \"chromInfo\": \"\\\"/home/repet_cloud/galaxy/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null, \"strand\": \"\\\"\\\"\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
397 "tool_version": "2.24.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
398 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
399 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
400 "uuid": "9313c43f-34a3-4f5d-bb44-544bfe63de1f"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
401 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
402 "11": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
403 "annotation": "",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
404 "id": 11,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
405 "input_connections": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
406 "ClassCode|cuffcom_tmap": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
407 "id": 9,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
408 "output_name": "input1_tmap"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
409 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
410 "inputFile": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
411 "id": 10,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
412 "output_name": "output"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
413 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
414 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
415 "inputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
416 "label": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
417 "name": "ClosestToStartSite",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
418 "outputs": [
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
419 {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
420 "name": "outputFile",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
421 "type": "bed"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
422 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
423 ],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
424 "position": {
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
425 "left": 1823.5,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
426 "top": 461
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
427 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
428 "post_job_actions": {},
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
429 "tool_errors": null,
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
430 "tool_id": "toolshed.g2.bx.psu.edu/repos/urgi-team/teiso/ClosestToStartSite/1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
431 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"ClassCode\": \"{\\\"cuffcom_tmap\\\": null, \\\"get_class_code\\\": \\\"True\\\", \\\"__current_case__\\\": 1}\", \"inputFile\": \"null\"}",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
432 "tool_version": "1.0",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
433 "type": "tool",
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
434 "user_outputs": [],
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
435 "uuid": "760d9506-a1a6-4a84-81fa-db67ea91ef53"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
436 }
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
437 },
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
438 "uuid": "ad643964-b679-41d0-a74f-e712a8550c7f"
a4d1ca76edb8 Uploaded
urgi-team
parents:
diff changeset
439 }