Mercurial > repos > vimalkumarvelayudhan > riboplot

annotate run_riboplot_sample.sh @ 7:096c6bbf4a04

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Thu, 13 Aug 2015 15:03:20 +0100
parents 8e1efafa6277
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
1 #!/bin/bash
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
2 python riboplot/riboplot.py -b tests/data/5hRPFsorted.bam \
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
3 -f tests/data/zebrafish.fna \
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
4 -t 'gi|148357119|ref|NM_001098396.1|' \
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
5 # -n tests/data/5hmRNAsorted.bam
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
6