Mercurial > repos > vimalkumarvelayudhan > riboplot

annotate run_ribocount_sample.sh @ 8:844eb8c36f32

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Add help section in xml and update usage documentation
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Mon, 17 Aug 2015 10:27:58 +0100
parents 096c6bbf4a04
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7
096c6bbf4a04 Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
1 #!/bin/bash
096c6bbf4a04 Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
2 python riboplot/ribocount.py -b tests/data/5hRPFsorted.bam \
096c6bbf4a04 Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
3 -f tests/data/zebrafish.fna
096c6bbf4a04 Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
diff changeset
4