Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison ribocount.xml @ 1:1e9797878349
remove samtools requirement and use updated pysam
| author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
|---|---|
| date | Mon, 29 Jun 2015 17:12:15 +0100 |
| parents | ca58e9466cbf |
| children | b6fd86c539ea |
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| 0:ca58e9466cbf | 1:1e9797878349 |
|---|---|
| 1 <tool id="ribocount" name="ribocount" version="0.1.0"> | 1 <tool id="ribocount" name="ribocount" version="0.1.0"> |
| 2 <description>Get read counts for all transcripts in an alignment (BAM) | 2 <description>Get read counts for all transcripts in an alignment (BAM) |
| 3 </description> | 3 </description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="0.7.7">pysam</requirement> | 5 <requirement type="package" version="0.8.3">pysam</requirement> |
| 6 <requirement type="package" version="0.1.18">samtools</requirement> | |
| 7 </requirements> | 6 </requirements> |
| 8 <stdio> | 7 <stdio> |
| 9 <exit_code range="1:" level="fatal" description="Error" /> | 8 <exit_code range="1:" level="fatal" description="Error" /> |
| 10 </stdio> | 9 </stdio> |
| 11 <command interpreter="python">./riboplot/ribocount.py | 10 <command interpreter="python">./riboplot/ribocount.py |