Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison ribocount.xml @ 1:1e9797878349
remove samtools requirement and use updated pysam
author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
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date | Mon, 29 Jun 2015 17:12:15 +0100 |
parents | ca58e9466cbf |
children | b6fd86c539ea |
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0:ca58e9466cbf | 1:1e9797878349 |
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1 <tool id="ribocount" name="ribocount" version="0.1.0"> | 1 <tool id="ribocount" name="ribocount" version="0.1.0"> |
2 <description>Get read counts for all transcripts in an alignment (BAM) | 2 <description>Get read counts for all transcripts in an alignment (BAM) |
3 </description> | 3 </description> |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="0.7.7">pysam</requirement> | 5 <requirement type="package" version="0.8.3">pysam</requirement> |
6 <requirement type="package" version="0.1.18">samtools</requirement> | |
7 </requirements> | 6 </requirements> |
8 <stdio> | 7 <stdio> |
9 <exit_code range="1:" level="fatal" description="Error" /> | 8 <exit_code range="1:" level="fatal" description="Error" /> |
10 </stdio> | 9 </stdio> |
11 <command interpreter="python">./riboplot/ribocount.py | 10 <command interpreter="python">./riboplot/ribocount.py |