Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison ribocount.xml @ 26:4b1254319802
Attempt 3 using virtualenv
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Tue, 01 Sep 2015 17:50:38 +0100 |
| parents | e623f4daf567 |
| children | 99dda3e39997 |
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| 25:80d8e91e8b46 | 26:4b1254319802 |
|---|---|
| 5 <requirement type="package" version="0.1.0">riboplot</requirement> | 5 <requirement type="package" version="0.1.0">riboplot</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <stdio> | 7 <stdio> |
| 8 <exit_code range="1:" level="fatal" description="Error" /> | 8 <exit_code range="1:" level="fatal" description="Error" /> |
| 9 </stdio> | 9 </stdio> |
| 10 <command>ribocount | 10 <command interpreter="python">${RIBOPLOT_PATH}/ribocount |
| 11 --ribo_file "${ribo_file}" | 11 --ribo_file "${ribo_file}" |
| 12 --transcriptome_fasta "${transcriptome_fasta}" | 12 --transcriptome_fasta "${transcriptome_fasta}" |
| 13 --read_length "${read_length}" | 13 --read_length "${read_length}" |
| 14 --read_offset "${read_offset}" | 14 --read_offset "${read_offset}" |
| 15 --html_file "${html_file}" | 15 --html_file "${html_file}" |