Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison docs/Makefile @ 3:8e1efafa6277
Updated version
* Bugfix: blue lines in some plots (bar colors were not set correctly)
* Cookiecutter template
* Additional unit tests
* Add plot legend
author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
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date | Wed, 12 Aug 2015 09:27:45 +0100 |
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2:b6fd86c539ea | 3:8e1efafa6277 |
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1 # Makefile for Sphinx documentation | |
2 # | |
3 | |
4 # You can set these variables from the command line. | |
5 SPHINXOPTS = | |
6 SPHINXBUILD = sphinx-build | |
7 PAPER = | |
8 BUILDDIR = _build | |
9 | |
10 # User-friendly check for sphinx-build | |
11 ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1) | |
12 $(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/) | |
13 endif | |
14 | |
15 # Internal variables. | |
16 PAPEROPT_a4 = -D latex_paper_size=a4 | |
17 PAPEROPT_letter = -D latex_paper_size=letter | |
18 ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . | |
19 # the i18n builder cannot share the environment and doctrees with the others | |
20 I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . | |
21 | |
22 .PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext | |
23 | |
24 help: | |
25 @echo "Please use \`make <target>' where <target> is one of" | |
26 @echo " html to make standalone HTML files" | |
27 @echo " dirhtml to make HTML files named index.html in directories" | |
28 @echo " singlehtml to make a single large HTML file" | |
29 @echo " pickle to make pickle files" | |
30 @echo " json to make JSON files" | |
31 @echo " htmlhelp to make HTML files and a HTML help project" | |
32 @echo " qthelp to make HTML files and a qthelp project" | |
33 @echo " devhelp to make HTML files and a Devhelp project" | |
34 @echo " epub to make an epub" | |
35 @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" | |
36 @echo " latexpdf to make LaTeX files and run them through pdflatex" | |
37 @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx" | |
38 @echo " text to make text files" | |
39 @echo " man to make manual pages" | |
40 @echo " texinfo to make Texinfo files" | |
41 @echo " info to make Texinfo files and run them through makeinfo" | |
42 @echo " gettext to make PO message catalogs" | |
43 @echo " changes to make an overview of all changed/added/deprecated items" | |
44 @echo " xml to make Docutils-native XML files" | |
45 @echo " pseudoxml to make pseudoxml-XML files for display purposes" | |
46 @echo " linkcheck to check all external links for integrity" | |
47 @echo " doctest to run all doctests embedded in the documentation (if enabled)" | |
48 | |
49 clean: | |
50 rm -rf $(BUILDDIR)/* | |
51 | |
52 html: | |
53 $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html | |
54 @echo | |
55 @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." | |
56 | |
57 dirhtml: | |
58 $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml | |
59 @echo | |
60 @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." | |
61 | |
62 singlehtml: | |
63 $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml | |
64 @echo | |
65 @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." | |
66 | |
67 pickle: | |
68 $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle | |
69 @echo | |
70 @echo "Build finished; now you can process the pickle files." | |
71 | |
72 json: | |
73 $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json | |
74 @echo | |
75 @echo "Build finished; now you can process the JSON files." | |
76 | |
77 htmlhelp: | |
78 $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp | |
79 @echo | |
80 @echo "Build finished; now you can run HTML Help Workshop with the" \ | |
81 ".hhp project file in $(BUILDDIR)/htmlhelp." | |
82 | |
83 qthelp: | |
84 $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp | |
85 @echo | |
86 @echo "Build finished; now you can run "qcollectiongenerator" with the" \ | |
87 ".qhcp project file in $(BUILDDIR)/qthelp, like this:" | |
88 @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/riboplot.qhcp" | |
89 @echo "To view the help file:" | |
90 @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/riboplot.qhc" | |
91 | |
92 devhelp: | |
93 $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp | |
94 @echo | |
95 @echo "Build finished." | |
96 @echo "To view the help file:" | |
97 @echo "# mkdir -p $$HOME/.local/share/devhelp/riboplot" | |
98 @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/riboplot" | |
99 @echo "# devhelp" | |
100 | |
101 epub: | |
102 $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub | |
103 @echo | |
104 @echo "Build finished. The epub file is in $(BUILDDIR)/epub." | |
105 | |
106 latex: | |
107 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | |
108 @echo | |
109 @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." | |
110 @echo "Run \`make' in that directory to run these through (pdf)latex" \ | |
111 "(use \`make latexpdf' here to do that automatically)." | |
112 | |
113 latexpdf: | |
114 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | |
115 @echo "Running LaTeX files through pdflatex..." | |
116 $(MAKE) -C $(BUILDDIR)/latex all-pdf | |
117 @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." | |
118 | |
119 latexpdfja: | |
120 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | |
121 @echo "Running LaTeX files through platex and dvipdfmx..." | |
122 $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja | |
123 @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." | |
124 | |
125 text: | |
126 $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text | |
127 @echo | |
128 @echo "Build finished. The text files are in $(BUILDDIR)/text." | |
129 | |
130 man: | |
131 $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man | |
132 @echo | |
133 @echo "Build finished. The manual pages are in $(BUILDDIR)/man." | |
134 | |
135 texinfo: | |
136 $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo | |
137 @echo | |
138 @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." | |
139 @echo "Run \`make' in that directory to run these through makeinfo" \ | |
140 "(use \`make info' here to do that automatically)." | |
141 | |
142 info: | |
143 $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo | |
144 @echo "Running Texinfo files through makeinfo..." | |
145 make -C $(BUILDDIR)/texinfo info | |
146 @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." | |
147 | |
148 gettext: | |
149 $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale | |
150 @echo | |
151 @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." | |
152 | |
153 changes: | |
154 $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes | |
155 @echo | |
156 @echo "The overview file is in $(BUILDDIR)/changes." | |
157 | |
158 linkcheck: | |
159 $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck | |
160 @echo | |
161 @echo "Link check complete; look for any errors in the above output " \ | |
162 "or in $(BUILDDIR)/linkcheck/output.txt." | |
163 | |
164 doctest: | |
165 $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest | |
166 @echo "Testing of doctests in the sources finished, look at the " \ | |
167 "results in $(BUILDDIR)/doctest/output.txt." | |
168 | |
169 xml: | |
170 $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml | |
171 @echo | |
172 @echo "Build finished. The XML files are in $(BUILDDIR)/xml." | |
173 | |
174 pseudoxml: | |
175 $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml | |
176 @echo | |
177 @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml." |