Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison docs/Makefile @ 3:8e1efafa6277
Updated version
* Bugfix: blue lines in some plots (bar colors were not set correctly)
* Cookiecutter template
* Additional unit tests
* Add plot legend
| author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
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| date | Wed, 12 Aug 2015 09:27:45 +0100 |
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| 2:b6fd86c539ea | 3:8e1efafa6277 |
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| 1 # Makefile for Sphinx documentation | |
| 2 # | |
| 3 | |
| 4 # You can set these variables from the command line. | |
| 5 SPHINXOPTS = | |
| 6 SPHINXBUILD = sphinx-build | |
| 7 PAPER = | |
| 8 BUILDDIR = _build | |
| 9 | |
| 10 # User-friendly check for sphinx-build | |
| 11 ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1) | |
| 12 $(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/) | |
| 13 endif | |
| 14 | |
| 15 # Internal variables. | |
| 16 PAPEROPT_a4 = -D latex_paper_size=a4 | |
| 17 PAPEROPT_letter = -D latex_paper_size=letter | |
| 18 ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . | |
| 19 # the i18n builder cannot share the environment and doctrees with the others | |
| 20 I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . | |
| 21 | |
| 22 .PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext | |
| 23 | |
| 24 help: | |
| 25 @echo "Please use \`make <target>' where <target> is one of" | |
| 26 @echo " html to make standalone HTML files" | |
| 27 @echo " dirhtml to make HTML files named index.html in directories" | |
| 28 @echo " singlehtml to make a single large HTML file" | |
| 29 @echo " pickle to make pickle files" | |
| 30 @echo " json to make JSON files" | |
| 31 @echo " htmlhelp to make HTML files and a HTML help project" | |
| 32 @echo " qthelp to make HTML files and a qthelp project" | |
| 33 @echo " devhelp to make HTML files and a Devhelp project" | |
| 34 @echo " epub to make an epub" | |
| 35 @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" | |
| 36 @echo " latexpdf to make LaTeX files and run them through pdflatex" | |
| 37 @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx" | |
| 38 @echo " text to make text files" | |
| 39 @echo " man to make manual pages" | |
| 40 @echo " texinfo to make Texinfo files" | |
| 41 @echo " info to make Texinfo files and run them through makeinfo" | |
| 42 @echo " gettext to make PO message catalogs" | |
| 43 @echo " changes to make an overview of all changed/added/deprecated items" | |
| 44 @echo " xml to make Docutils-native XML files" | |
| 45 @echo " pseudoxml to make pseudoxml-XML files for display purposes" | |
| 46 @echo " linkcheck to check all external links for integrity" | |
| 47 @echo " doctest to run all doctests embedded in the documentation (if enabled)" | |
| 48 | |
| 49 clean: | |
| 50 rm -rf $(BUILDDIR)/* | |
| 51 | |
| 52 html: | |
| 53 $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html | |
| 54 @echo | |
| 55 @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." | |
| 56 | |
| 57 dirhtml: | |
| 58 $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml | |
| 59 @echo | |
| 60 @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." | |
| 61 | |
| 62 singlehtml: | |
| 63 $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml | |
| 64 @echo | |
| 65 @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." | |
| 66 | |
| 67 pickle: | |
| 68 $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle | |
| 69 @echo | |
| 70 @echo "Build finished; now you can process the pickle files." | |
| 71 | |
| 72 json: | |
| 73 $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json | |
| 74 @echo | |
| 75 @echo "Build finished; now you can process the JSON files." | |
| 76 | |
| 77 htmlhelp: | |
| 78 $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp | |
| 79 @echo | |
| 80 @echo "Build finished; now you can run HTML Help Workshop with the" \ | |
| 81 ".hhp project file in $(BUILDDIR)/htmlhelp." | |
| 82 | |
| 83 qthelp: | |
| 84 $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp | |
| 85 @echo | |
| 86 @echo "Build finished; now you can run "qcollectiongenerator" with the" \ | |
| 87 ".qhcp project file in $(BUILDDIR)/qthelp, like this:" | |
| 88 @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/riboplot.qhcp" | |
| 89 @echo "To view the help file:" | |
| 90 @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/riboplot.qhc" | |
| 91 | |
| 92 devhelp: | |
| 93 $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp | |
| 94 @echo | |
| 95 @echo "Build finished." | |
| 96 @echo "To view the help file:" | |
| 97 @echo "# mkdir -p $$HOME/.local/share/devhelp/riboplot" | |
| 98 @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/riboplot" | |
| 99 @echo "# devhelp" | |
| 100 | |
| 101 epub: | |
| 102 $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub | |
| 103 @echo | |
| 104 @echo "Build finished. The epub file is in $(BUILDDIR)/epub." | |
| 105 | |
| 106 latex: | |
| 107 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | |
| 108 @echo | |
| 109 @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." | |
| 110 @echo "Run \`make' in that directory to run these through (pdf)latex" \ | |
| 111 "(use \`make latexpdf' here to do that automatically)." | |
| 112 | |
| 113 latexpdf: | |
| 114 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | |
| 115 @echo "Running LaTeX files through pdflatex..." | |
| 116 $(MAKE) -C $(BUILDDIR)/latex all-pdf | |
| 117 @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." | |
| 118 | |
| 119 latexpdfja: | |
| 120 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | |
| 121 @echo "Running LaTeX files through platex and dvipdfmx..." | |
| 122 $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja | |
| 123 @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." | |
| 124 | |
| 125 text: | |
| 126 $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text | |
| 127 @echo | |
| 128 @echo "Build finished. The text files are in $(BUILDDIR)/text." | |
| 129 | |
| 130 man: | |
| 131 $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man | |
| 132 @echo | |
| 133 @echo "Build finished. The manual pages are in $(BUILDDIR)/man." | |
| 134 | |
| 135 texinfo: | |
| 136 $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo | |
| 137 @echo | |
| 138 @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." | |
| 139 @echo "Run \`make' in that directory to run these through makeinfo" \ | |
| 140 "(use \`make info' here to do that automatically)." | |
| 141 | |
| 142 info: | |
| 143 $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo | |
| 144 @echo "Running Texinfo files through makeinfo..." | |
| 145 make -C $(BUILDDIR)/texinfo info | |
| 146 @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." | |
| 147 | |
| 148 gettext: | |
| 149 $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale | |
| 150 @echo | |
| 151 @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." | |
| 152 | |
| 153 changes: | |
| 154 $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes | |
| 155 @echo | |
| 156 @echo "The overview file is in $(BUILDDIR)/changes." | |
| 157 | |
| 158 linkcheck: | |
| 159 $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck | |
| 160 @echo | |
| 161 @echo "Link check complete; look for any errors in the above output " \ | |
| 162 "or in $(BUILDDIR)/linkcheck/output.txt." | |
| 163 | |
| 164 doctest: | |
| 165 $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest | |
| 166 @echo "Testing of doctests in the sources finished, look at the " \ | |
| 167 "results in $(BUILDDIR)/doctest/output.txt." | |
| 168 | |
| 169 xml: | |
| 170 $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml | |
| 171 @echo | |
| 172 @echo "Build finished. The XML files are in $(BUILDDIR)/xml." | |
| 173 | |
| 174 pseudoxml: | |
| 175 $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml | |
| 176 @echo | |
| 177 @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml." |
