Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison riboplot.xml @ 27:99dda3e39997
Attempt 4 using virtualenv
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Wed, 02 Sep 2015 12:23:20 +0100 |
| parents | 4b1254319802 |
| children | fb64b970da25 |
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| 26:4b1254319802 | 27:99dda3e39997 |
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| 5 <requirement type="package" version="0.1.0">riboplot</requirement> | 5 <requirement type="package" version="0.1.0">riboplot</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <stdio> | 7 <stdio> |
| 8 <exit_code range="1:" level="fatal" description="Error" /> | 8 <exit_code range="1:" level="fatal" description="Error" /> |
| 9 </stdio> | 9 </stdio> |
| 10 <command interpreter="python">${RIBOPLOT_PATH}/riboplot | 10 <command>python \${RIBOPLOT_PATH}/riboplot |
| 11 --ribo_file "${ribo_file}" | 11 --ribo_file "${ribo_file}" |
| 12 --transcriptome_fasta "${transcriptome_fasta}" | 12 --transcriptome_fasta "${transcriptome_fasta}" |
| 13 --transcript_name "${transcript_name}" | 13 --transcript_name "${transcript_name}" |
| 14 #if $rnacov.rnacov_select=="yes" | 14 #if $rnacov.rnacov_select=="yes" |
| 15 --rna_file "${rna_file}" | 15 --rna_file "${rna_file}" |