Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison riboplot.xml @ 30:b26c8f3b5aa6
Use latest version of riboplot from PyPI (0.2.1)
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Fri, 16 Oct 2015 17:19:33 +0100 |
| parents | fb64b970da25 |
| children | 69f43f4144df |
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| 29:fb64b970da25 | 30:b26c8f3b5aa6 |
|---|---|
| 1 <tool id="riboplot" name="riboplot" version="0.1.0"> | 1 <tool id="riboplot" name="riboplot" version="0.2.0"> |
| 2 <description>Plot and output read counts for a single transcript in an alignment (BAM) | 2 <description>Plot and output read counts for a single transcript in an alignment (BAM) |
| 3 </description> | 3 </description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="0.1.1">riboplot</requirement> | 5 <requirement type="package" version="0.2.1">riboplot</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <stdio> | 7 <stdio> |
| 8 <exit_code range="1:" level="fatal" description="Error" /> | 8 <exit_code range="1:" level="fatal" description="Error" /> |
| 9 </stdio> | 9 </stdio> |
| 10 <command>python \${RIBOPLOT_PATH}/riboplot | 10 <command>python \${RIBOPLOT_PATH}/riboplot |
| 76 | 76 |
| 77 4. RNA coverage [optional] (Sorted BAM file) | 77 4. RNA coverage [optional] (Sorted BAM file) |
| 78 | 78 |
| 79 If you have RNA-Seq data (sorted BAM), you can select the option to plot RNA coverage. | 79 If you have RNA-Seq data (sorted BAM), you can select the option to plot RNA coverage. |
| 80 | 80 |
| 81 5. Read lengths to consider [Optional] (Integer - 0 or greater) | 81 5. Read lengths to consider [optional] (Integer - 0 or greater) |
| 82 | 82 |
| 83 If this option is provided, only Ribo-Seq data of the given length is considered. | 83 If this option is provided, only Ribo-Seq data of the given length is considered. |
| 84 | 84 |
| 85 6. Offset [optional] (Integer - 0 or greater) | 85 6. Offset [optional] (Integer - 0 or greater) |
| 86 | 86 |