Mercurial > repos > vimalkumarvelayudhan > riboplot

comparison tool_dependencies.xml @ 18:cff63cf0dea8

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Update tool_dependencies to install package from pip
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Mon, 31 Aug 2015 14:13:03 +0100
parents 805b779d4013
children a013fc01d8f3
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17:805b779d4013 18:cff63cf0dea8
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="matplotlib" version="1.2.1"> 3 <package name="ez_setup" version="0.9">
4 <repository changeset_revision="50b86df1f968" name="package_matplotlib_1_2" 4 <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc"
5 owner="iuc" prior_installation_required="True" 5 prior_installation_required="True"/>
6 />
7 </package> 6 </package>
8 <package name="pysam" version="0.8.3"> 7 <package name="riboplot" version="0.1.0">
9 <repository changeset_revision="ee642ed79a3b" name="package_python_2_7_pysam_0_8_3" 8 <install version="1.0">
10 owner="iuc" prior_installation_required="True" 9 <actions>
11 /> 10 <action type="download_by_url">https://pypi.python.org/packages/source/r/riboplot/riboplot-0.1.0.tar.gz</action>
11 <action type="set_environment_for_install">
12 <repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc">
13 <package name="ez_setup" version="0.9" />
14 </repository>
15 </action>
16 <action type="make_directory">$INSTALL_DIR/lib/python</action>
17 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
18 <action type="set_environment">
19 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
21 <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR</environment_variable>
22 </action>
23 </actions>
24 </install>
25 <readme>
26 Requires installation of matplotlib 1.3.1 and pysam 0.8.3. RNA coverage requires bedtools installed.
27 </readme>
12 </package> 28 </package>
13 </tool_dependency> 29 </tool_dependency>