Mercurial > repos > vimalkumarvelayudhan > riboplot
diff tests/test_ribocount.py @ 14:628f82e72d72
Version as released on PyPI 0.1.0
| author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
|---|---|
| date | Wed, 26 Aug 2015 16:37:10 +0100 |
| parents | 61c47a1d6a7a |
| children |
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--- a/tests/test_ribocount.py Fri Aug 21 12:37:54 2015 +0100 +++ b/tests/test_ribocount.py Wed Aug 26 16:37:10 2015 +0100 @@ -8,12 +8,12 @@ CONFIG = ribocount.CONFIG = riboplot.config.TestingConfig() logging.disable(logging.CRITICAL) -RIBO_FILE = os.path.join(CONFIG.DATA_DIR, '5hRPFsorted.bam') -RNA_FILE = os.path.join(CONFIG.DATA_DIR, '5hmRNAsorted.bam') +RIBO_FILE = os.path.join(CONFIG.TEST_DATA_DIR, '5hRPFsorted.bam') +RNA_FILE = os.path.join(CONFIG.TEST_DATA_DIR, '5hmRNAsorted.bam') TRANSCRIPT_NAME = 'gi|148357119|ref|NM_001098396.1|' -TRANSCRIPTOME_FASTA = os.path.join(CONFIG.DATA_DIR, 'zebrafish.fna') -TRANSCRIPTOME_FASTA_MINUS1 = os.path.join(CONFIG.DATA_DIR, 'zebrafish_minus1.fna') -UNRELATED_FASTA = os.path.join(CONFIG.DATA_DIR, 'unrelated.fna') +TRANSCRIPTOME_FASTA = os.path.join(CONFIG.TEST_DATA_DIR, 'zebrafish.fna') +TRANSCRIPTOME_FASTA_MINUS1 = os.path.join(CONFIG.TEST_DATA_DIR, 'zebrafish_minus1.fna') +UNRELATED_FASTA = os.path.join(CONFIG.TEST_DATA_DIR, 'unrelated.fna') class RiboCountTestCase(unittest.TestCase):