diff docs/conf.py @ 3:8e1efafa6277

Updated version * Bugfix: blue lines in some plots (bar colors were not set correctly) * Cookiecutter template * Additional unit tests * Add plot legend

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docs/conf.py	Wed Aug 12 09:27:45 2015 +0100
@@ -0,0 +1,275 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# riboplot documentation build configuration file, created by
+# sphinx-quickstart on Tue Jul  9 22:26:36 2013.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+import sys
+import os
+
+# If extensions (or modules to document with autodoc) are in another
+# directory, add these directories to sys.path here. If the directory is
+# relative to the documentation root, use os.path.abspath to make it
+# absolute, like shown here.
+#sys.path.insert(0, os.path.abspath('.'))
+
+# Get the project root dir, which is the parent dir of this
+cwd = os.getcwd()
+project_root = os.path.dirname(cwd)
+
+# Insert the project root dir as the first element in the PYTHONPATH.
+# This lets us ensure that the source package is imported, and that its
+# version is used.
+sys.path.insert(0, project_root)
+
+import riboplot
+
+# -- General configuration ---------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'RiboPlot'
+copyright = u'2015, Vimalkumar Velayudhan'
+
+# The version info for the project you're documenting, acts as replacement
+# for |version| and |release|, also used in various other places throughout
+# the built documents.
+#
+# The short X.Y version.
+version = riboplot.__version__
+# The full version, including alpha/beta/rc tags.
+release = riboplot.__version__
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to
+# some non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['_build']
+
+# The reST default role (used for this markup: `text`) to use for all
+# documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+# If true, keep warnings as "system message" paragraphs in the built
+# documents.
+#keep_warnings = False
+
+
+# -- Options for HTML output -------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+html_theme = 'default'
+
+# Theme options are theme-specific and customize the look and feel of a
+# theme further.  For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+#html_theme_path = []
+
+# The name for this set of Sphinx documents.  If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar.  Default is the same as
+# html_title.
+#html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the
+# top of the sidebar.
+#html_logo = None
+
+# The name of an image file (within the static path) to use as favicon
+# of the docs.  This file should be a Windows icon file (.ico) being
+# 16x16 or 32x32 pixels large.
+#html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets)
+# here, relative to this directory. They are copied after the builtin
+# static files, so a file named "default.css" will overwrite the builtin
+# "default.css".
+html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page
+# bottom, using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names
+# to template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_domain_indices = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer.
+# Default is True.
+#html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer.
+# Default is True.
+#html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages
+# will contain a <link> tag referring to it.  The value of this option
+# must be the base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'riboplotdoc'
+
+
+# -- Options for LaTeX output ------------------------------------------
+
+latex_elements = {
+    # The paper size ('letterpaper' or 'a4paper').
+    #'papersize': 'letterpaper',
+
+    # The font size ('10pt', '11pt' or '12pt').
+    #'pointsize': '10pt',
+
+    # Additional stuff for the LaTeX preamble.
+    #'preamble': '',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass
+# [howto/manual]).
+latex_documents = [
+    ('index', 'riboplot.tex',
+     u'RiboPlot Documentation',
+     u'Vimalkumar Velayudhan', 'manual'),
+]
+
+# The name of an image file (relative to this directory) to place at
+# the top of the title page.
+#latex_logo = None
+
+# For "manual" documents, if this is true, then toplevel headings
+# are parts, not chapters.
+#latex_use_parts = False
+
+# If true, show page references after internal links.
+#latex_show_pagerefs = False
+
+# If true, show URL addresses after external links.
+#latex_show_urls = False
+
+# Documents to append as an appendix to all manuals.
+#latex_appendices = []
+
+# If false, no module index is generated.
+#latex_domain_indices = True
+
+
+# -- Options for manual page output ------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+    ('index', 'riboplot',
+     u'RiboPlot Documentation',
+     [u'Vimalkumar Velayudhan'], 1)
+]
+
+# If true, show URL addresses after external links.
+#man_show_urls = False
+
+
+# -- Options for Texinfo output ----------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+#  dir menu entry, description, category)
+texinfo_documents = [
+    ('index', 'riboplot',
+     u'RiboPlot Documentation',
+     u'Vimalkumar Velayudhan',
+     'riboplot',
+     'One line description of project.',
+     'Miscellaneous'),
+]
+
+# Documents to append as an appendix to all manuals.
+#texinfo_appendices = []
+
+# If false, no module index is generated.
+#texinfo_domain_indices = True
+
+# How to display URL addresses: 'footnote', 'no', or 'inline'.
+#texinfo_show_urls = 'footnote'
+
+# If true, do not generate a @detailmenu in the "Top" node's menu.
+#texinfo_no_detailmenu = False
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