diff ribocount.xml @ 18:cff63cf0dea8

Update tool_dependencies to install package from pip

--- a/ribocount.xml	Mon Aug 31 11:41:48 2015 +0100
+++ b/ribocount.xml	Mon Aug 31 14:13:03 2015 +0100
@@ -2,12 +2,12 @@
     <description>Get read counts for all transcripts in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="0.8.3">pysam</requirement>
+        <requirement type="package" version="0.1.0">riboplot</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
-    <command interpreter="python">riboplot/ribocount.py
+    <command interpreter="python">ribocount
     --ribo_file "${ribo_file}"
     --transcriptome_fasta "${transcriptome_fasta}"
     --read_length "${read_length}"