diff riboplot.xml @ 18:cff63cf0dea8

Update tool_dependencies to install package from pip
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Mon, 31 Aug 2015 14:13:03 +0100
parents 844eb8c36f32
children a013fc01d8f3
line wrap: on
line diff
--- a/riboplot.xml	Mon Aug 31 11:41:48 2015 +0100
+++ b/riboplot.xml	Mon Aug 31 14:13:03 2015 +0100
@@ -2,13 +2,12 @@
     <description>Plot and output read counts for a single transcript in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="1.2.1">matplotlib</requirement>
-        <requirement type="package" version="0.8.3">pysam</requirement>
+        <requirement type="package" version="0.1.0">riboplot</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
-    <command interpreter="python">riboplot/riboplot.py
+    <command interpreter="python">riboplot
     --ribo_file "${ribo_file}"
     --transcriptome_fasta "${transcriptome_fasta}"
     --transcript_name "${transcript_name}"