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view tool_dependencies.xml @ 26:4b1254319802

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Attempt 3 using virtualenv
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Tue, 01 Sep 2015 17:50:38 +0100
parents 80d8e91e8b46
children 99dda3e39997
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<?xml version="1.0"?>
<tool_dependency>
    <package name="riboplot" version="0.1.0">
        <install version="1.0">
            <actions>
                <action type="setup_virtualenv">riboplot==0.1.0</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
           Note: RNA coverage requires bedtools installed.
        </readme>
    </package>
</tool_dependency>