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Fix usage link
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Mon, 17 Aug 2015 10:51:58 +0100
parents 096c6bbf4a04
children 628f82e72d72
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===============================
RiboPlot
===============================

.. image:: https://img.shields.io/travis/vimalkumarvelayudhan/riboplot.svg
        :target: https://travis-ci.org/vimalkumarvelayudhan/riboplot

.. image:: https://img.shields.io/pypi/v/riboplot.svg
        :target: https://pypi.python.org/pypi/riboplot


RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).

There are two programs in the package:

**riboplot**
    Plot and output read counts (csv) for a single transcript.

**ribocount**
    Output read counts for all transcripts in an alignment.

For help on using these programs, please refer to :ref:`usage`.


Free software: BSD license.

Documentation: https://riboplot.readthedocs.org.