Mercurial > repos > vimalkumarvelayudhan > riboplot

view README.rst @ 29:fb64b970da25

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Use latest version (0.1.1) from PyPI
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Fri, 11 Sep 2015 10:19:58 +0100
parents 60bbd8ebe314
children b26c8f3b5aa6
line wrap: on
line source

RiboPlot
========
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).

There are two programs in the package:

**riboplot**

    Plot and output read counts (csv) for a single transcript.

**ribocount**

    Output read counts for all transcripts in an alignment.

Free software: GPL license

Documentation: https://riboplot.readthedocs.org

Repository: https://github.com/vimalkumarvelayudhan/riboplot


.. note::

    RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. 

    This release of riboplot has been tested with bedtools version ``2.17.0``.

    On Ubuntu and derivatives, bedtools can be installed from the repositories using::

        sudo apt-get install bedtools