Mercurial > repos > vimalkumarvelayudhan > riboplot
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Use latest version (0.1.1) from PyPI
author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
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date | Fri, 11 Sep 2015 10:19:58 +0100 |
parents | 60bbd8ebe314 |
children | b26c8f3b5aa6 |
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RiboPlot ======== RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format). There are two programs in the package: **riboplot** Plot and output read counts (csv) for a single transcript. **ribocount** Output read counts for all transcripts in an alignment. Free software: GPL license Documentation: https://riboplot.readthedocs.org Repository: https://github.com/vimalkumarvelayudhan/riboplot .. note:: RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. This release of riboplot has been tested with bedtools version ``2.17.0``. On Ubuntu and derivatives, bedtools can be installed from the repositories using:: sudo apt-get install bedtools