# HG changeset patch
# User Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
# Date 1446207280 0
# Node ID 42fe64cac818ef3ad6d0100b6ad861892260e453
# Parent  fc2094c0f3552688a8eb2c9cc3976495b7be19c7
Add bedtools as a dependency for riboplot

diff -r fc2094c0f355 -r 42fe64cac818 README.rst
--- a/README.rst	Fri Oct 30 10:10:05 2015 +0000
+++ b/README.rst	Fri Oct 30 12:14:40 2015 +0000
@@ -21,13 +21,6 @@
 
 .. note::
 
-    1.  RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed.
-
-        This release of riboplot has been tested with bedtools version ``2.17.0``.
+    Matplotlib installation requires freetype headers and libraries installed
+    (``libfreetype6-dev`` on Ubuntu 14.04).
 
-        On Ubuntu and derivatives, bedtools can be installed from the repositories using::
-
-            sudo apt-get install bedtools
-
-    2.  Matplotlib installation requires freetype headers and libraries installed
-        (``libfreetype6-dev`` on Ubuntu 14.04).
diff -r fc2094c0f355 -r 42fe64cac818 riboplot.xml
--- a/riboplot.xml	Fri Oct 30 10:10:05 2015 +0000
+++ b/riboplot.xml	Fri Oct 30 12:14:40 2015 +0000
@@ -3,6 +3,7 @@
     </description>
     <requirements>
         <requirement type="package" version="0.2.2">riboplot</requirement>
+        <requirement type="package" version="2.24">bedtools</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
diff -r fc2094c0f355 -r 42fe64cac818 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Oct 30 10:10:05 2015 +0000
+++ b/tool_dependencies.xml	Fri Oct 30 12:14:40 2015 +0000
@@ -10,11 +10,10 @@
             </actions>
         </install>
         <readme>
-            Note:
-
-            Matplotlib installation requires freetype headers and libraries installed (libfreetype6-dev on Ubuntu 14.04).
-
-            RNA coverage requires bedtools installed.
+            Please check README.rst
         </readme>
     </package>
+    <package name="bedtools" version="2.24">
+        <repository name="package_bedtools_2_24" owner="iuc" />
+    </package>
 </tool_dependency>