# HG changeset patch
# User Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
# Date 1440756446 -3600
# Node ID 6e3b13906b54413a931ef5872cf612e14c83ed9c
# Parent  ef39290c19aff633b36c7fb9f0374feb8bfcfd69
Use packages from the test toolshed. Add bedtools dependency

diff -r ef39290c19af -r 6e3b13906b54 riboplot.xml
--- a/riboplot.xml	Thu Aug 27 13:03:28 2015 +0100
+++ b/riboplot.xml	Fri Aug 28 11:07:26 2015 +0100
@@ -4,6 +4,7 @@
     <requirements>
         <requirement type="package" version="1.2.1">matplotlib</requirement>
         <requirement type="package" version="0.8.3">pysam</requirement>
+        <requirement type="package" version="2.18">bedtools</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
diff -r ef39290c19af -r 6e3b13906b54 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Aug 27 13:03:28 2015 +0100
+++ b/tool_dependencies.xml	Fri Aug 28 11:07:26 2015 +0100
@@ -1,13 +1,15 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="matplotlib" version="1.2.1">
-        <repository changeset_revision="5066727ab023" name="package_matplotlib_1_2"
-                    owner="ribogalaxy" prior_installation_required="True"
-                    toolshed="http://toolshed.ribogalaxy.ucc.ie" />
+        <repository changeset_revision="55a75739919b" name="package_matplotlib_1_2"
+                    owner="iuc" prior_installation_required="True"/>
     </package>
     <package name="pysam" version="0.8.3">
-        <repository changeset_revision="190ad904a112" name="package_pysam_0_8_3"
-                    owner="ribogalaxy" prior_installation_required="True"
-                    toolshed="http://toolshed.ribogalaxy.ucc.ie" />
+        <repository changeset_revision="d2615d52baee" name="package_python_2_7_pysam_0_8_3"
+                    owner="iuc" prior_installation_required="True"/>
+    </package>
+    <package name="bedtools" version="2.18">
+        <repository changeset_revision="ea89a5911878" name="package_bedtools_2_18"
+                    owner="iuc" prior_installation_required="True"/>
     </package>
 </tool_dependency>