# HG changeset patch
# User Vimalkumar Velayudhan <vimal@biotechcoder.com>
# Date 1440676368 -3600
# Node ID b78a5ba760b196a32b88441b9e842f1c1da13805
# Parent  628f82e72d7202622c6bb729cc60e229c8b720be
Update README, add new sample image

diff -r 628f82e72d72 -r b78a5ba760b1 README.rst
--- a/README.rst	Wed Aug 26 16:37:10 2015 +0100
+++ b/README.rst	Thu Aug 27 12:52:48 2015 +0100
@@ -19,8 +19,6 @@
 **ribocount**
     Output read counts for all transcripts in an alignment.
 
-For help on using these programs, please refer to :ref:`usage`.
-
 
 Free software: GPL license.
 
diff -r 628f82e72d72 -r b78a5ba760b1 docs/conf.py
--- a/docs/conf.py	Wed Aug 26 16:37:10 2015 +0100
+++ b/docs/conf.py	Thu Aug 27 12:52:48 2015 +0100
@@ -15,6 +15,17 @@
 
 import sys
 import os
+# To get the docs to build on readthedocs.org
+from mock import Mock as MagicMock
+
+class Mock(MagicMock):
+    @classmethod
+    def __getattr__(cls, name):
+        return Mock()
+
+MOCK_MODULES = ['matplotlib']
+sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES)
+
 
 # If extensions (or modules to document with autodoc) are in another
 # directory, add these directories to sys.path here. If the directory is
@@ -40,7 +51,7 @@
 
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
-extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode']
+extensions = ['sphinx.ext.viewcode']
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
diff -r 628f82e72d72 -r b78a5ba760b1 docs/index.rst
--- a/docs/index.rst	Wed Aug 26 16:37:10 2015 +0100
+++ b/docs/index.rst	Thu Aug 27 12:52:48 2015 +0100
@@ -19,11 +19,6 @@
    authors
    history
 
-API:
-
-.. toctree::
-
-   modules
 
 Indices and tables
 ==================
diff -r 628f82e72d72 -r b78a5ba760b1 docs/modules.rst
--- a/docs/modules.rst	Wed Aug 26 16:37:10 2015 +0100
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-riboplot
-========
-
-.. toctree::
-   :maxdepth: 4
-
-   riboplot
diff -r 628f82e72d72 -r b78a5ba760b1 docs/riboplot.rst
--- a/docs/riboplot.rst	Wed Aug 26 16:37:10 2015 +0100
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,45 +0,0 @@
-riboplot package
-================
-
-Submodules
-----------
-
-riboplot.config module
-----------------------
-
-.. automodule:: riboplot.config
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-riboplot.ribocore module
-------------------------
-
-.. automodule:: riboplot.ribocore
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-riboplot.ribocount module
--------------------------
-
-.. automodule:: riboplot.ribocount
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-riboplot.riboplot module
-------------------------
-
-.. automodule:: riboplot.riboplot
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-Module contents
----------------
-
-.. automodule:: riboplot
-    :members:
-    :undoc-members:
-    :show-inheritance:
diff -r 628f82e72d72 -r b78a5ba760b1 images/riboplot.png
Binary file images/riboplot.png has changed