Mercurial > repos > vimalkumarvelayudhan > riboplot
changeset 28:60bbd8ebe314
Working install (virtualenv)
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Wed, 02 Sep 2015 14:25:18 +0100 |
| parents | 99dda3e39997 |
| children | fb64b970da25 |
| files | .editorconfig .travis.yml README.rst requirements.txt |
| diffstat | 4 files changed, 7 insertions(+), 58 deletions(-) [+] |
line wrap: on
line diff
--- a/.editorconfig Wed Sep 02 12:23:20 2015 +0100 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,21 +0,0 @@ -# http://editorconfig.org - -root = true - -[*] -indent_style = space -indent_size = 4 -trim_trailing_whitespace = true -insert_final_newline = true -charset = utf-8 -end_of_line = lf - -[*.bat] -indent_style = tab -end_of_line = crlf - -[LICENSE] -insert_final_newline = false - -[Makefile] -indent_style = tab \ No newline at end of file
--- a/.travis.yml Wed Sep 02 12:23:20 2015 +0100 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,16 +0,0 @@ -# Config file for automatic testing at travis-ci.org - -language: python - -python: - - "3.4" - - "3.3" - - "2.7" - - "2.6" - - "pypy" - -# command to install dependencies, e.g. pip install -r requirements.txt --use-mirrors -install: pip install -r requirements.txt - -# command to run tests, e.g. python setup.py test -script: python setup.py test \ No newline at end of file
--- a/README.rst Wed Sep 02 12:23:20 2015 +0100 +++ b/README.rst Wed Sep 02 14:25:18 2015 +0100 @@ -27,26 +27,14 @@ Repository: https://github.com/vimalkumarvelayudhan/riboplot -Requirements ------------- -Python packages -............... -* matplotlib ``1.3.1`` -* pysam ``0.8.3`` + +.. note:: + + RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. -If you have a virtualenv setup, these packages and their dependencies can be installed -using:: - - pip install matplotlib==1.3.1 - pip install pysam==0.8.3 + This release of riboplot has been tested with bedtools version ``2.17.0``. -Bedtools -........ -RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. - -This release of riboplot has been tested with bedtools version ``2.17.0``. + On Ubuntu and derivatives, bedtools can be installed from the repositories using:: -On Ubuntu and derivatives, bedtools can be installed from the repositories using:: + sudo apt-get install bedtools - sudo apt-get install bedtools -