Mercurial > repos > vimalkumarvelayudhan > riboplot

changeset 35:de451be99b93

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Use latest version of riboplot from PyPI (0.2.3)
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Tue, 24 Nov 2015 12:03:37 +0000
parents 1cafe3494b3a
children 3985e058fd63
files README.rst ribocount.xml riboplot.xml tool_dependencies.xml
diffstat 4 files changed, 11 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Fri Oct 30 12:26:20 2015 +0000
+++ b/README.rst	Tue Nov 24 12:03:37 2015 +0000
@@ -14,10 +14,13 @@
 
 Free software: GPL license
 
-Documentation: http://pythonhosted.org/riboplot
+Documentation: http://pythonhosted.org/riboplot.
+
+PyPI: https://pypi.python.org/pypi/riboplot.
 
-Repository: https://github.com/vimalkvn/riboplot
+Github Repository: https://github.com/vimalkvn/riboplot.
 
+Online: http://ribogalaxy.ucc.ie (under RiboSeq Analysis/RiboPlot).
 
 .. note::
 
--- a/ribocount.xml	Fri Oct 30 12:26:20 2015 +0000
+++ b/ribocount.xml	Tue Nov 24 12:03:37 2015 +0000
@@ -1,8 +1,8 @@
-<tool id="ribocount" name="ribocount" version="0.2.0">
+<tool id="ribocount" name="ribocount" version="0.2.3">
     <description>Get read counts for all transcripts in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="0.2.2">riboplot</requirement>
+        <requirement type="package" version="0.2.3">riboplot</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
--- a/riboplot.xml	Fri Oct 30 12:26:20 2015 +0000
+++ b/riboplot.xml	Tue Nov 24 12:03:37 2015 +0000
@@ -1,8 +1,8 @@
-<tool id="riboplot" name="riboplot" version="0.2.0">
+<tool id="riboplot" name="riboplot" version="0.2.3">
     <description>Plot and output read counts for a single transcript in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="0.2.2">riboplot</requirement>
+        <requirement type="package" version="0.2.3">riboplot</requirement>
         <requirement type="package" version="2.24">bedtools</requirement>
     </requirements>
     <stdio>
--- a/tool_dependencies.xml	Fri Oct 30 12:26:20 2015 +0000
+++ b/tool_dependencies.xml	Tue Nov 24 12:03:37 2015 +0000
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="riboplot" version="0.2.2">
+    <package name="riboplot" version="0.2.3">
         <install version="1.0">
             <actions>
-                <action type="setup_virtualenv">riboplot==0.2.2</action>
+                <action type="setup_virtualenv">riboplot==0.2.3</action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR/venv/bin</environment_variable>
                 </action>