Mercurial > repos > vimalkumarvelayudhan > riboplot
changeset 22:e623f4daf567
Remove interpreter option from wrappers. Update requirements.txt
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Mon, 31 Aug 2015 15:41:17 +0100 |
| parents | 3429405e2ce1 |
| children | 787ee2d925bb |
| files | requirements.txt ribocount.xml riboplot.xml |
| diffstat | 3 files changed, 2 insertions(+), 12 deletions(-) [+] |
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--- a/requirements.txt Mon Aug 31 14:54:40 2015 +0100 +++ b/requirements.txt Mon Aug 31 15:41:17 2015 +0100 @@ -1,12 +1,2 @@ -argparse==1.2.1 -backports.ssl-match-hostname==3.4.0.2 -certifi==2015.04.28 matplotlib==1.3.1 -nose==1.3.7 -numpy==1.9.2 -pyparsing==2.0.3 pysam==0.8.3 -python-dateutil==2.4.2 -six==1.9.0 -tornado==4.2.1 -wsgiref==0.1.2
--- a/ribocount.xml Mon Aug 31 14:54:40 2015 +0100 +++ b/ribocount.xml Mon Aug 31 15:41:17 2015 +0100 @@ -7,7 +7,7 @@ <stdio> <exit_code range="1:" level="fatal" description="Error" /> </stdio> - <command interpreter="python">ribocount + <command>ribocount --ribo_file "${ribo_file}" --transcriptome_fasta "${transcriptome_fasta}" --read_length "${read_length}"
--- a/riboplot.xml Mon Aug 31 14:54:40 2015 +0100 +++ b/riboplot.xml Mon Aug 31 15:41:17 2015 +0100 @@ -7,7 +7,7 @@ <stdio> <exit_code range="1:" level="fatal" description="Error" /> </stdio> - <command interpreter="python">riboplot + <command>riboplot --ribo_file "${ribo_file}" --transcriptome_fasta "${transcriptome_fasta}" --transcript_name "${transcript_name}"