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author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Wed, 22 Jul 2015 12:20:16 +0100
parents d7ce95ccf54f
children 5a242f289347
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3:d7ce95ccf54f 4:de357bab306d
1 riboseqr_wrapper 1 riboseqr_wrapper
2 ================ 2 ================
3 `riboSeqR <http://bioconductor.org/packages/3.0/bioc/html/riboSeqR.html>`_ 3 `riboSeqR <http://bioconductor.org/packages/3.0/bioc/html/riboSeqR.html>`_
4 integration for `Galaxy <http://galaxyproject.org/>`_ and 4 integration for `RiboGalaxy <http://ribogalaxy.ucc.ie/>`_ and `Galaxy <http://galaxyproject.org/>`_.
5 `RiboGalaxy <http://ribogalaxy.ucc.ie/>`_.
6 5
7 Included tools 6 Included tools
8 -------------- 7 --------------
9 In the order they are run 8 In the order they are run
10 9
67 riboDat <- readRibodata(ribofiles, rnafiles, replicates = c("WT", "WT", "M", "M")) 66 riboDat <- readRibodata(ribofiles, rnafiles, replicates = c("WT", "WT", "M", "M"))
68 save(riboDat, file="Prepare riboSeqR input (R data file)") 67 save(riboDat, file="Prepare riboSeqR input (R data file)")
69 68
70 rsem_chlamy236_deNovo.transcripts.fa - sample data from the riboSeqR package. 69 rsem_chlamy236_deNovo.transcripts.fa - sample data from the riboSeqR package.
71 70
71 Bugs/Issues?
72 ------------
73 Please report here https://github.com/vimalkumarvelayudhan/riboseqr_wrapper/issues