comparison metagene.xml @ 6:5a242f289347 default tip

Merge

5:423ad61697c4

        --rdata_save "$rdata_save"
        --html_file "$html_file"
        --output_path "$html_file.files_path"
    </command>
    <inputs>
        <param name="rdata_load" type="data" format="rda"
               label="Select Triplet periodicity (R data file)"
               multiple="false" optional="false"
               help="&lt;br&gt;&lt;h4&gt;&lt;font color=&quot;#666666&quot;&gt;filterHits parameters (footprint reads to be used in the analysis)&lt;/font&gt;&lt;/h4&gt;">
            <validator type="expression"
                       message="Please check if the correct RDA file is selected">value.name == "Triplet periodicity (R data file)"</validator>

    </inputs>
    <stdio>
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>
    <outputs>
        <data format="rda" name="rdata_save"
              label="Metagene analysis (R data file)"/>
        <data format="html" name="html_file"
              label="Metagene analysis (HTML report)"/>
    </outputs>
    <!--<tests>-->
    <!--<test>-->
    <!--<param name="rdata_load" value="Triplet periodicity (R data file)" ftype="rda"/>-->
    <!--<param name="hit_mean" value="50"/>-->
    <!--<param name="unique_hit_mean" value="10"/>-->
    <!--<param name="min5p" value="-20"/>-->
    <!--<param name="max5p" value="200"/>-->
    <!--<param name="min3p" value="-200"/>-->
    <!--<param name="max3p" value="20"/>-->
    <!--<param name="cap" value=""/>-->
    <!--<param name="plot_title" value=""/>-->
    <!--<output name="rdata_save" file="Metagene analysis (R data file)" ftype="rda"/>-->
    <!--<output name="html_file" file="Metagene_analysis_(HTML_report).html">-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1.pdf" value="Metagene-analysis-plot1.pdf"/>-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1_1.png" value="Metagene-analysis-plot1_1.png"/>-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1_2.png" value="Metagene-analysis-plot1_2.png"/>-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1_3.png" value="Metagene-analysis-plot1_3.png"/>-->

6:5a242f289347

        --rdata_save "$rdata_save"
        --html_file "$html_file"
        --output_path "$html_file.files_path"
    </command>
    <inputs>
        <param name="rdata_load" type="data" format="RData"
               label="Select Triplet periodicity (R data file)"
               multiple="false" optional="false"
               help="&lt;br&gt;&lt;h4&gt;&lt;font color=&quot;#666666&quot;&gt;filterHits parameters (footprint reads to be used in the analysis)&lt;/font&gt;&lt;/h4&gt;">
            <validator type="expression"
                       message="Please check if the correct RDA file is selected">value.name == "Triplet periodicity (R data file)"</validator>

    </inputs>
    <stdio>
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>
    <outputs>
        <data format="RData" name="rdata_save"
              label="Metagene analysis (R data file)"/>
        <data format="html" name="html_file"
              label="Metagene analysis (HTML report)"/>
    </outputs>
    <!--<tests>-->
    <!--<test>-->
    <!--<param name="rdata_load" value="Triplet periodicity (R data file)" ftype="RData"/>-->
    <!--<param name="hit_mean" value="50"/>-->
    <!--<param name="unique_hit_mean" value="10"/>-->
    <!--<param name="min5p" value="-20"/>-->
    <!--<param name="max5p" value="200"/>-->
    <!--<param name="min3p" value="-200"/>-->
    <!--<param name="max3p" value="20"/>-->
    <!--<param name="cap" value=""/>-->
    <!--<param name="plot_title" value=""/>-->
    <!--<output name="rdata_save" file="Metagene analysis (R data file)" ftype="RData"/>-->
    <!--<output name="html_file" file="Metagene_analysis_(HTML_report).html">-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1.pdf" value="Metagene-analysis-plot1.pdf"/>-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1_1.png" value="Metagene-analysis-plot1_1.png"/>-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1_2.png" value="Metagene-analysis-plot1_2.png"/>-->
    <!--<extra_files type="file" name="Metagene-analysis-plot1_3.png" value="Metagene-analysis-plot1_3.png"/>-->